<!-- badges: start --> [](https://github.com/statOmics/msqrob2/actions/workflows/check-bioc.yml) [](https://app.codecov.io/gh/statOmics/msqrob2?branch=master) <!-- badges: end --> # R package: msqrob2 ## Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure The `msqrob2` package ports and modernises the method presented in [`MSqRob`](https://github.com/statOmics/MSqRob) and [`MSqRobSum`](https://github.com/statOmics/MSqRobSum) to use the [`QFeatures`](https://rformassspectrometry.github.io/QFeatures/articles/QFeatures.html) class infrastructure. ## Installation To install the current version of *msqrob2*, run. ``` if(!requireNamespace("BiocManager", quietly = TRUE)) { install.packages("BiocManager") } BiocManager::install("statOmics/msqrob2") ``` The dependencies of the package are listed in the DESCRIPTION file of the package. ## Issues and bug reports Please use https://github.com/statOmics/msqrob2/issues to submit issues, bug reports, and comments. ## Usage See vignettes on [msqrob2Examples](https://statomics.github.io/msqrob2Examples)