1. msqrob2
  2. Graph
Graph of msqrob2
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  • 01d67a4 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:33:44 -0400;
  • 6bf2b78 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:33:44 -0400;
  • ce8b4f9 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:30:03 -0400;
  • 33d0081 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:30:03 -0400;
  • f85e8f3 (origin/RELEASE_3_16, RELEASE_3_16) version bump in devel by StijnVandenbulcke <vandenbulcke.stijn@gmail.com> 2023-02-02 15:58:20 +0100;
  • bc30d37 removed the lmer object that was accidently left in by StijnVandenbulcke <vandenbulcke.stijn@gmail.com> 2023-02-02 15:48:25 +0100;
  • fd3d7aa Corrected version number after bug fix by StijnVandenbulcke <vandenbulcke.stijn@gmail.com> 2023-02-02 15:37:47 +0100;
  • 6d461f2 Update version number by StijnVandenbulcke <vandenbulcke.stijn@gmail.com> 2023-02-02 15:29:56 +0100;
  • d4a2946 Added the weights to the statmodel and removed the full model which was accidently left in. by StijnVandenbulcke <vandenbulcke.stijn@gmail.com> 2023-01-18 11:22:13 +0100;
  • 84b0778 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:25:02 -0400;
  • 92afcac bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:25:02 -0400;
  • 35a41fd Merge pull request <a href="#44">#44</a> from StijnVandenbulcke/master by StijnVandenbulcke <57996469+StijnVandenbulcke@users.noreply.github.com> 2022-10-27 14:44:41 +0200;
  • 9ff2de1 Corrected documentation issues by StijnVandenbulcke <vandenbulcke.stijn@gmail.com> 2022-10-26 22:26:22 +0200;
  • 79d5df9 Fixed formatting by StijnVandenbulcke <vandenbulcke.stijn@gmail.com> 2022-10-26 02:40:55 +0200;
  • 413d85c Update DESCRIPTION by StijnVandenbulcke <57996469+StijnVandenbulcke@users.noreply.github.com> 2022-10-26 02:37:21 +0200;
  • f4bd54a Update NEWS.md by StijnVandenbulcke <57996469+StijnVandenbulcke@users.noreply.github.com> 2022-10-26 02:36:56 +0200;
  • df1dad1 Fixed errors by StijnVandenbulcke <vandenbulcke.stijn@gmail.com> 2022-10-26 02:34:04 +0200;
  • 39477fc Changed order of arguments to the same in all functions by StijnVandenbulcke <vandenbulcke.stijn@gmail.com> 2022-10-26 01:40:25 +0200;
  • 130acf2 Merge branch 'statOmics:master' into master by StijnVandenbulcke <57996469+StijnVandenbulcke@users.noreply.github.com> 2022-10-26 01:36:16 +0200;
  • d39edd4 Added option to use mixed models without the ridge regression by StijnVandenbulcke <vandenbulcke.stijn@gmail.com> 2022-10-26 01:35:31 +0200;
  • 3938690 Refactored the code. by StijnVandenbulcke <vandenbulcke.stijn@gmail.com> 2022-10-18 19:02:14 +0200;
  • e8ae25c Updated version to 1.5.2 by StijnVandenbulcke <57996469+StijnVandenbulcke@users.noreply.github.com> 2022-10-11 13:12:10 +0200;
  • d11218f Merge pull request <a href="#42">#42</a> from StijnVandenbulcke/master by StijnVandenbulcke <57996469+StijnVandenbulcke@users.noreply.github.com> 2022-10-11 01:45:43 +0200;
  • d0c4d88 Temporary fix to replace the filterFeatures error by StijnVandenbulcke <vandenbulcke.stijn@gmail.com> 2022-10-11 01:43:42 +0200;
  • b29fe1e Disable NEWS check in BiocCheck by Milan Malfait <milan.malfait94@gmail.com> 2022-10-10 13:54:57 +0200;
  • d9f391c Update GitHub Actions (#41) by Milan Malfait <milan.malfait94@gmail.com> 2022-10-10 13:04:57 +0200;
  • 95333a5 Merge pull request <a href="#39">#39</a> from StijnVandenbulcke/master by StijnVandenbulcke <57996469+StijnVandenbulcke@users.noreply.github.com> 2022-10-06 22:57:46 +0200;
  • 6882fda Corrected the version number by StijnVandenbulcke <vandenbulcke.stijn@gmail.com> 2022-10-06 22:56:08 +0200;
  • 8d11a28 Updated msqrob2 changes by StijnVandenbulcke <vandenbulcke.stijn@gmail.com> 2022-10-06 15:01:25 +0200;
  • 6dc2d7b Corrected QR decomposition and the weighted variance covariance matrix calculation by StijnVandenbulcke <vandenbulcke.stijn@gmail.com> 2022-10-06 14:54:27 +0200;
  • a5eba69 Merge pull request <a href="#37">#37</a> from cvanderaa/master by Milan Malfait <milan.malfait94@gmail.com> 2022-10-06 11:16:11 +0200;
  • 28ec2bd Updated link to QFeatures vignette by cvanderaa <43441105+cvanderaa@users.noreply.github.com> 2022-07-12 15:10:25 +0200;
  • cd520d8 Merge branch 'master' of https://git.bioconductor.org/packages/msqrob2 by Milan Malfait <milan.malfait94@gmail.com> 2022-04-27 15:39:38 +0200;
  • 21d49ef bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:16:10 +0000;
  • 042dbaf (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:16:10 +0000;
  • a7c68aa Update GHA to R-devel / Bioc-devel by Milan Malfait <milan.malfait94@gmail.com> 2022-01-17 12:44:32 +0100;
  • 5190541 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:10:11 +0000;
  • 815b2a6 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:10:11 +0000;
  • 156ebfe Merge pull request <a href="#31">#31</a> from milanmlft/fix-vignette by Milan Malfait <milan.malfait94@gmail.com> 2021-09-16 16:25:18 +0200;
  • 41ab42d Bump version by Milan Malfait <milan.malfait94@gmail.com> 2021-09-16 15:07:13 +0200;
  • 7469d94 Fix filtering steps in vignette by Milan Malfait <milan.malfait94@gmail.com> 2021-09-16 14:17:18 +0200;
  • 7422dbd Merge Bioc master branch by Milan Malfait <milan.malfait94@gmail.com> 2021-09-16 14:59:03 +0200;
  • 77b50b5 Merge pull request <a href="#30">#30</a> from milanmlft/master by Milan Malfait <milan.malfait94@gmail.com> 2021-09-16 14:58:32 +0200;
  • 0ed8832 Update actions: use Bioc-3.14, enable Windows + Mac again by Milan Malfait <milan.malfait94@gmail.com> 2021-05-27 11:42:10 +0200;
  • 453df88 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 17:03:40 +0000;
  • 7f5bee4 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 17:03:40 +0000;
  • 121f7f1 update typo Description file by Lieven Clement <lieven.clement@gmail.com> 2021-05-06 13:40:59 +0200;
  • e7031a3 Fix standard errors on the model parameter estimates by msqrobLmer when using doQR = TRUE (Fix by Stijn) by Lieven Clement <lieven.clement@gmail.com> 2021-05-06 13:23:01 +0200;
  • 9923ea6 bump version to update vignette on bioc by Lieven Clement <lieven.clement@gmail.com> 2021-05-06 11:43:23 +0200;
  • 5bf685d Merge pull request <a href="#29">#29</a> from milanmlft/fixes by lievenclement <lieven.clement@gmail.com> 2021-05-06 11:36:55 +0200;
  • bb24024 Add myself as contributor by Milan Malfait <milan.malfait94@gmail.com> 2021-04-30 18:06:12 +0200;
  • 0d40152 Manually install preprocessCore without threading by Milan Malfait <milan.malfait94@gmail.com> 2021-04-30 17:37:17 +0200;
  • ed7fc17 Don't build vignettes during installation on GHA by Milan Malfait <milan.malfait94@gmail.com> 2021-04-30 17:14:55 +0200;
  • 5363dab Set `usage` for `pe` data by Milan Malfait <milan.malfait94@gmail.com> 2021-04-30 17:13:09 +0200;
  • 1e09111 Enable unit tests in GHA by Milan Malfait <milan.malfait94@gmail.com> 2021-04-30 13:33:03 +0200;
  • 545bc83 Disable macOS and Windows GHA checks for now by Milan Malfait <milan.malfait94@gmail.com> 2021-04-30 12:49:26 +0200;
  • 441ab90 Add URLs to DESCRIPTION by Milan Malfait <milan.malfait94@gmail.com> 2021-04-30 11:05:02 +0200;
  • dbcd990 Remove `eval=FALSE` from vignette by Milan Malfait <milan.malfait94@gmail.com> 2021-04-30 10:53:09 +0200;
  • 1382571 Ignore vignette cache by Milan Malfait <milan.malfait94@gmail.com> 2021-04-30 10:50:43 +0200;
  • 9758405 Ignore some vignette-related stuff by Milan Malfait <milan.malfait94@gmail.com> 2021-04-30 10:21:43 +0200;
  • a426898 Add dev/ folder to .Rbuildignore by Milan Malfait <milan.malfait94@gmail.com> 2021-04-30 10:17:54 +0200;
  • 8a70098 Add Rproj stuff to .gitignore and .Rbuildignore by Milan Malfait <milan.malfait94@gmail.com> 2021-04-30 10:17:28 +0200;
  • 167129e resolved notes on signallers, sapply, 1:..., and formatting of examples by Lieven Clement <lieven.clement@gmail.com> 2021-04-29 04:06:50 +0200;
  • 796c17d resolved notes on signallers, sapply, 1:..., and formatting of examples by Lieven Clement <lieven.clement@gmail.com> 2021-04-29 04:05:29 +0200;
  • 0f630e1 DESCRIPTION R version and added NEWS file by statOmics <lieven.clement@ugent.be> 2021-04-28 11:29:52 +0200;
  • 110e6a5 update README by statOmics <lieven.clement@ugent.be> 2021-04-22 15:24:24 +0200;
  • 00f2b18 added method introduction to vignette by statOmics <lieven.clement@ugent.be> 2021-04-22 13:47:46 +0200;
  • 6b96fdd changed version number for bioc submission by statOmics <lieven.clement@ugent.be> 2021-04-22 13:14:25 +0200;
  • 041fe05 one vignette to reduce package size and link to msqrob2examples website solve problem with references and gridExtra that was not included in vignette by statOmics <lieven.clement@ugent.be> 2021-04-22 12:31:15 +0200;
  • 70baa93 one vignette to reduce package size and link to msqrob2examples website solve problem with references by statOmics <lieven.clement@ugent.be> 2021-04-22 12:29:43 +0200;
  • 2fa3f98 one vignette to reduce package size and link to msqrob2examples website by statOmics <lieven.clement@ugent.be> 2021-04-22 12:18:27 +0200;
  • d880d8f try with three vignettes only and not readr in suggests of description by statOmics <lieven.clement@ugent.be> 2021-04-22 10:02:27 +0200;
  • e96d79b no labelled data vignette by statOmics <lieven.clement@ugent.be> 2021-04-22 09:27:40 +0200;
  • 46bbe7d removed ecoliTmtMethod comparison and DEqSeq because package cannot be found, added all remaining vignettes to the vignette folder by statOmics <lieven.clement@ugent.be> 2021-04-22 04:15:33 +0200;
  • c3984ca check ecoliTmtMethodComparison vignette, altered read.table to read_tsv + added DEqSeq package to suggests field of Description file by statOmics <lieven.clement@ugent.be> 2021-04-22 04:07:19 +0200;
  • ba2bd24 check ecoliTmt vignette, altered read.table to read_tsv by statOmics <lieven.clement@ugent.be> 2021-04-22 03:50:34 +0200;
  • f51f2b8 check ecoliTmt vignette, altered read.table to read_tsv by statOmics <lieven.clement@ugent.be> 2021-04-22 03:48:27 +0200;
  • ce8a73f without ecoliTmtMethodComparison because of error with missing DEqMS package, removed DEqMS from suggest field in Description by statOmics <lieven.clement@ugent.be> 2021-04-22 02:55:18 +0200;
  • fa8f4d4 check with five vignettes and DEqMS by statOmics <lieven.clement@ugent.be> 2021-04-22 02:20:20 +0200;
  • b22a11d check with saturn check-bioc, two vignettes and gridExtra by statOmics <lieven.clement@ugent.be> 2021-04-22 01:45:52 +0200;
  • 1846530 check with one vignette upon passing all checks and removing gridExtra and DEqMS in Description and adding scp as test by statOmics <lieven.clement@ugent.be> 2021-04-22 01:20:15 +0200;
  • d7fef27 check with one vignette upon passing all checks and adding gridExtra and DEqMS in Description again by statOmics <lieven.clement@ugent.be> 2021-04-22 00:55:50 +0200;
  • bfa7cb2 check with one vignette and without gridExtra and DEqMS because they do not install by statOmics <lieven.clement@ugent.be> 2021-04-22 00:34:21 +0200;
  • e8ee8f9 check with one vignette and without gridExtra and DEqMS because they do not install by statOmics <lieven.clement@ugent.be> 2021-04-21 23:58:52 +0200;
  • e1d0eb5 check with one vignette only by statOmics <lieven.clement@ugent.be> 2021-04-21 22:25:36 +0200;
  • d9a0db4 add gridExtra package to reduce vignette size 2 by statOmics <lieven.clement@ugent.be> 2021-04-21 22:04:08 +0200;
  • 8f5074c add gridExtra package to reduce vignette size by statOmics <lieven.clement@ugent.be> 2021-04-21 21:33:24 +0200;
  • ea7d08e add packages in Description Suggest field to run all vignettes by statOmics <lieven.clement@ugent.be> 2021-04-21 19:53:10 +0200;
  • dd227d0 resolve warnings from BiocCheck by statOmics <lieven.clement@ugent.be> 2021-04-21 19:18:50 +0200;
  • 7330e36 resolve warnings from BiocCheck by statOmics <lieven.clement@ugent.be> 2021-04-21 19:18:07 +0200;
  • 6c3c86d resolve errors from BiocCheck 3 by statOmics <lieven.clement@ugent.be> 2021-04-21 18:45:21 +0200;
  • f2f1e9f resolve errors from BiocCheck 2 by statOmics <lieven.clement@ugent.be> 2021-04-21 18:23:02 +0200;
  • d8f0bc2 resolve errors from BiocCheck 2 by statOmics <lieven.clement@ugent.be> 2021-04-21 18:21:13 +0200;
  • ed48cd0 resolve errors from BiocCheck by statOmics <lieven.clement@ugent.be> 2021-04-21 17:55:00 +0200;
  • 5dbb454 add libraries in suggests field for vignettes to pass R CMD checks 3 by statOmics <lieven.clement@ugent.be> 2021-04-21 16:07:02 +0200;
  • 8ce8f2a preparing bioc submission R CMD checks 3 by statOmics <lieven.clement@ugent.be> 2021-04-21 15:45:20 +0200;
  • 905c1c1 preparing bioc submission R CMD checks 3 by statOmics <lieven.clement@ugent.be> 2021-04-21 15:44:03 +0200;
  • a3c5654 preparing bioc submission R CMD checks 2 by statOmics <lieven.clement@ugent.be> 2021-04-21 15:23:17 +0200;
  • cf133db prepare for bioconductor submission by statOmics <lieven.clement@ugent.be> 2021-04-21 08:48:23 +0200;
  • a64f2b6 increased required version for Qfeatures and R by statOmics <lieven.clement@ugent.be> 2021-04-20 19:03:11 +0200;