| a3f51b16 |
# Generated by roxygen2: do not edit by hand
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| 3b27556d |
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| 5e8063ce |
export(AUCell_assignCells)
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| 7ad11308 |
export(AUCell_buildRankings)
export(AUCell_calcAUC)
export(AUCell_exploreThresholds)
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| a3f51b16 |
export(AUCell_plotHist)
export(AUCell_plotTSNE)
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| 609a62cd |
export(AUCell_run)
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| 7ad11308 |
export(aucellResults)
export(getAUC)
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| 8e9262e4 |
export(getAssignments)
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| c3987f86 |
export(getRanking)
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| 60b007dc |
export(getSetNames)
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| 8e9262e4 |
export(getThresholdSelected)
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| 7ad11308 |
export(nGenes)
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| 0e8ce522 |
export(orderAUC)
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| 33a3ce01 |
export(plotEmb_rgb)
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| 2ac32c82 |
export(plotGeneCount)
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| 1e942706 |
export(plotTsne_cellProps)
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| 7ad11308 |
export(setGeneSetNames)
export(subsetGeneSets)
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| ebdf893b |
export(updateAucellResults)
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| 967d0537 |
exportMethods(cbind)
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| a3f51b16 |
exportMethods(getAUC)
exportMethods(getRanking)
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| 7e31205d |
exportMethods(rbind)
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| 7ad11308 |
import(GSEABase)
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| a3f51b16 |
import(data.table, except = shift)
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| 609a62cd |
importClassesFrom(DelayedArray,DelayedArray)
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| a3f51b16 |
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
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| bacdf30a |
importFrom(BiocGenerics,cbind)
importFrom(BiocGenerics,rbind)
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| 609a62cd |
importFrom(DelayedArray,DelayedArray)
importFrom(DelayedArray,blockApply)
importFrom(DelayedArray,colAutoGrid)
importFrom(DelayedMatrixStats,colRanks)
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| 3dbd53c6 |
importFrom(R.utils,capitalize)
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| a3f51b16 |
importFrom(grDevices,adjustcolor)
importFrom(grDevices,dev.off)
importFrom(grDevices,png)
importFrom(grDevices,rainbow)
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| 3dbd53c6 |
importFrom(graphics,abline)
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| a3f51b16 |
importFrom(graphics,box)
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| 3dbd53c6 |
importFrom(graphics,boxplot)
importFrom(graphics,hist)
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| a3f51b16 |
importFrom(graphics,legend)
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| 3dbd53c6 |
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
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| a3f51b16 |
importFrom(graphics,plot)
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| 3dbd53c6 |
importFrom(graphics,plot.new)
importFrom(graphics,points)
importFrom(graphics,rect)
importFrom(graphics,text)
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| 02468e1e |
importFrom(methods,is)
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| 3dbd53c6 |
importFrom(methods,new)
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| 02468e1e |
importFrom(stats,as.dist)
importFrom(stats,cor)
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| 3dbd53c6 |
importFrom(stats,density)
importFrom(stats,dnorm)
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| 02468e1e |
importFrom(stats,hclust)
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| 3dbd53c6 |
importFrom(stats,ks.test)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(utils,capture.output)
importFrom(utils,head)
importFrom(utils,installed.packages)
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| a3f51b16 |
importMethodsFrom(SummarizedExperiment,assay)
importMethodsFrom(SummarizedExperiment,assayNames)
importMethodsFrom(SummarizedExperiment,assays)
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