1. gep2pep
  2. Graph
Graph of gep2pep
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  • 98fa3a0 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:24:09 -0400;
  • 6d56a56 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:24:09 -0400;
  • 45570c7 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:02:39 -0400;
  • c397d7e (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:02:39 -0400;
  • 5f9dc4f bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:01:30 -0400;
  • 417bb03 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:01:30 -0400;
  • 1ae4039 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:58:13 -0400;
  • 363168c (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:58:13 -0400;
  • f8e66a1 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:16:48 -0400;
  • 77d2077 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:16:48 -0400;
  • caa6b12 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:45:30 +0000;
  • 9661693 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:45:30 +0000;
  • efacbde bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:40:07 +0000;
  • f1a07c8 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:40:07 +0000;
  • 243ef04 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:32:02 +0000;
  • c8755ce (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:32:02 +0000;
  • 6b74b03 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:29:59 -0400;
  • 801e702 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:29:59 -0400;
  • a24e46a bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:12:19 +0000;
  • baf75a9 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:12:19 +0000;
  • 6c80dbc bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:42:35 -0400;
  • cce30b8 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:10:54 -0400;
  • ef7aca1 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:15:24 -0400;
  • e083bac (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:09 -0400;
  • 0782762 merged from upstream by Ciccio <f.napolitano@tigem.it> 2019-03-31 00:16:16 +0100;
  • 50a9dc8 Fixed bugs, submitting to Bioconductor by Ciccio <f.napolitano@tigem.it> 2019-03-31 00:11:17 +0100;
  • 38ac4ca pulled from upstream by Ciccio <f.napolitano@tigem.it> 2019-03-30 17:00:06 +0100;
  • 9e6286b compyling with latest BiocCheck (some NOTES skipped) by Ciccio <f.napolitano@tigem.it> 2019-03-29 13:49:16 +0100;
  • 18c541a many changes to review by Ciccio <f.napolitano@tigem.it> 2019-03-28 16:55:06 +0100;
  • ec3d081 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:38 -0400;
  • fb62d67 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:07 -0400;
  • d927bdc Readme updated by Ciccio <f.napolitano@tigem.it> 2018-06-15 17:05:45 +0200;
  • 01f1413 Added SGE mode and and parameter to gene2pathways by Ciccio <f.napolitano@tigem.it> 2018-06-15 16:44:24 +0200;
  • 3e4b158 exportSEA now working in case of details=T by ciccio <franapoli@gmail.com> 2018-05-16 14:09:02 +0200;
  • bed8dc9 updated README by ciccio <franapoli@gmail.com> 2018-05-15 19:17:06 +0200;
  • 4266592 metadata fixes for new devel version by ciccio <franapoli@gmail.com> 2018-05-15 18:58:48 +0200;
  • a6e6181 fixes and added subset to pathSEA by Ciccio <f.napolitano@tigem.it> 2018-05-15 17:53:02 +0200;
  • 2d5df18 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:43 -0400;
  • bc54ceb (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:48 -0400;
  • 2d26790 removed CondSEA merging method from tests by Ciccio <f.napolitano@tigem.it> 2018-02-23 13:48:32 +0100;
  • 0e67c62 exported and documented createMergedRepository, BiocCheck clean by Ciccio <f.napolitano@tigem.it> 2018-02-16 17:47:38 +0100;
  • 6c2d930 Final raw mode - BiocCheck clean by Ciccio <f.napolitano@tigem.it> 2018-02-16 17:10:24 +0100;
  • 4d47957 This version includes an experimental merging method with caching that is probably going to be replaced with a less automatic method by Ciccio <f.napolitano@tigem.it> 2018-01-24 12:14:45 +0100;
  • 9072fb9 added organism option for importMSigDB.xml, added minsize and maxsize for computing KS statistic, changed rawmode datasets, added PEPs ranking function as a parameter, minor bug fixes by Ciccio <f.napolitano@tigem.it> 2018-01-19 12:42:44 +0100;
  • 802e772 Merge branch 'untested' of github.com:franapoli/gep2pep into untested by Ciccio <f.napolitano@tigem.it> 2018-01-01 21:46:39 +0100;
  • 261fe73 restoring rownames and colnames as chunk size solves the problem of huge file size by Ciccio <f.napolitano@tigem.it> 2018-01-01 21:46:27 +0100;
  • 062134e added .loadPEPs for raw mode by ciccio <franapoli@gmail.com> 2018-01-01 20:58:22 +0100;
  • 0fbdae6 changed _ to # in raw mode file names by Ciccio <f.napolitano@tigem.it> 2018-01-01 20:22:16 +0100;
  • ea12838 raw mode: temp file directly into repository by ciccio <franapoli@gmail.com> 2017-12-26 19:28:38 +0100;
  • 2af81ba added slection of collections in raw mode import by Ciccio <f.napolitano@tigem.it> 2017-12-26 18:53:17 +0100;
  • f44f37f importFromRawmode working by ciccio <franapoli@gmail.com> 2017-12-26 13:01:32 +0100;
  • 41af8cf added hdf5 composition, fixed version number to comply with bioconductor by Ciccio <f.napolitano@tigem.it> 2017-12-23 15:55:55 +0100;
  • 9096611 updated version number by Ciccio <f.napolitano@tigem.it> 2017-12-20 15:49:38 +0100;
  • 2e701c0 added raw mode by ciccio <franapoli@gmail.com> 2017-12-20 15:47:00 +0100;
  • dd19327 couple minor changes to vignette by ciccio <franapoli@gmail.com> 2017-11-22 17:29:51 +0100;
  • 071529a many small changes, this version ready for submission by ciccio <franapoli@gmail.com> 2017-11-21 00:43:35 +0100;
  • e1828e9 clean version, lacks collection parameter in getResults by ciccio <franapoli@gmail.com> 2017-11-20 21:17:15 +0100;
  • 230b33f Applying changes asked by Bioconductor, repoArray.R is only stored for future use by ciccio <franapoli@gmail.com> 2017-11-20 18:49:36 +0100;
  • 02c06c7 fixed some NAMESPACE issues, updated vignette for MSigDB 6.1 by ciccio <franapoli@gmail.com> 2017-10-18 16:53:13 +0200;
  • ea98eca removed forgotten test code by Ciccio <f.napolitano@tigem.it> 2017-10-17 17:36:08 +0200;
  • 23e333a XML import added automatically by ciccio <franapoli@gmail.com> 2017-10-17 16:13:30 +0200;
  • 2206374 added fallback code for MSigdb import by ciccio <franapoli@gmail.com> 2017-10-17 16:11:24 +0200;
  • 422fb08 switched names of loadCollection and .loadCollection by ciccio <franapoli@gmail.com> 2017-10-17 14:02:14 +0200;
  • ae215cf class members conflict for previous R versions fixed by Ciccio <f.napolitano@tigem.it> 2017-10-16 14:46:33 +0200;
  • 40f7966 fixed some formatting by ciccio <franapoli@gmail.com> 2017-10-15 15:43:33 +0200;
  • 91509b0 this version checks and BiocChecks clean by ciccio <franapoli@gmail.com> 2017-10-15 15:31:11 +0200;
  • bd3282a added class CategorizedCollection by ciccio <franapoli@gmail.com> 2017-10-15 03:11:26 +0200;
  • 582e46c Fixes in examples, vignettes and tests, check is clean by ciccio <franapoli@gmail.com> 2017-10-13 17:23:32 +0200;
  • bb020e7 switched to GSEABase classes for gene sets by ciccio <franapoli@gmail.com> 2017-10-12 17:05:31 +0200;
  • d3527f0 Bug fixes in PathSEA and exportSEA, vignette updated by ciccio <franapoli@gmail.com> 2017-10-10 18:52:25 +0200;
  • 86bb207 fixed bug with an error message by ciccio <franapoli@gmail.com> 2017-10-10 16:08:06 +0200;
  • bc38b34 Update DESCRIPTION by Francesco Napolitano <franapoli@gmail.com> 2017-09-25 13:17:47 +0200;
  • cf339cd Update README.md by Francesco Napolitano <franapoli@gmail.com> 2017-09-25 13:16:26 +0200;
  • b5764a0 Update README.md by Francesco Napolitano <franapoli@gmail.com> 2017-09-25 13:14:57 +0200;
  • 1280530 refactoring: perturbagens are now conditions. added README by ciccio <franapoli@gmail.com> 2017-09-25 13:01:11 +0200;
  • eed75ce removed emacs file added by mistake by Ciccio <f.napolitano@tigem.it> 2017-09-22 19:55:41 +0200;
  • 6b05452 changed documentation to add references to bioarxive and other, possible candidate version by ciccio <franapoli@gmail.com> 2017-09-22 19:37:41 +0200;
  • 731b815 fixed minor bugs with messages by ciccio <franapoli@gmail.com> 2017-09-22 18:26:38 +0200;
  • 7d6d3e7 added missing doc-file by ciccio <franapoli@gmail.com> 2017-09-21 22:29:04 +0200;
  • 4356d01 fixed minor bugs, version cran check-ed and BiocCheck-ed by ciccio <franapoli@gmail.com> 2017-09-21 22:28:35 +0200;
  • 9435849 Added checkRepository by ciccio <franapoli@gmail.com> 2017-09-21 17:16:55 +0200;
  • 49336c2 removed function getPerturbagens as not used by ciccio <franapoli@gmail.com> 2017-09-20 17:51:28 +0200;
  • c77026d fixed PathSEA error in testing by ciccio <franapoli@gmail.com> 2017-09-20 17:49:05 +0200;
  • e281561 many small changes, fixed bug when adding one GEP at a time by Ciccio <f.napolitano@tigem.it> 2017-09-20 16:41:45 +0200;
  • 2b022cd added back perturbagens variable by ciccio <franapoli@gmail.com> 2017-09-20 16:39:45 +0200;
  • 7f37cae Added openRepository and changed db and subdb fields in DB struct to category and subcategory by Ciccio <f.napolitano@tigem.it> 2017-09-15 17:32:50 +0200;
  • b920c40 exported gene2pathways and changed input format of PathSEA by Ciccio <f.napolitano@tigem.it> 2017-09-13 15:20:11 +0200;
  • 289a18f fixed version number as by Bioconductor convention by Ciccio <f.napolitano@tigem.it> 2017-09-13 01:03:08 +0200;
  • 0d1ca0f fixed BiocCheck whims by Ciccio <f.napolitano@tigem.it> 2017-09-12 23:43:12 +0200;
  • a62240c additional small fixes and vignette update by ciccio <franapoli@gmail.com> 2017-09-12 19:32:46 +0200;
  • 5336ae5 some documentation improvement, minor refactoring by Ciccio <f.napolitano@tigem.it> 2017-09-12 17:43:57 +0200;
  • b667dd2 some more refactoring, BiocCheck now only complains about indentation style by Ciccio <f.napolitano@tigem.it> 2017-09-11 12:01:25 +0200;
  • 8485f13 fixed vignette by Ciccio <f.napolitano@tigem.it> 2017-09-11 00:48:51 +0200;
  • 246dd70 missing file by ciccio <franapoli@gmail.com> 2017-09-11 00:01:58 +0200;
  • b7674f6 more refactoring by ciccio <franapoli@gmail.com> 2017-09-11 00:01:22 +0200;
  • 0598db0 working on vignette, will change gep2mep to gep2pep by ciccio <franapoli@gmail.com> 2017-09-10 22:25:52 +0200;
  • c6c52cb refactoring by Ciccio <f.napolitano@tigem.it> 2017-09-10 18:15:44 +0200;
  • a115e79 mostly updated ModSEA by Ciccio <f.napolitano@tigem.it> 2017-09-08 15:43:12 +0200;
  • d2086c9 Rmoved dependency from C functions of ks.test by Ciccio <f.napolitano@tigem.it> 2017-09-06 17:52:11 +0200;
  • a2786ca installable version by Ciccio <f.napolitano@tigem.it> 2017-09-04 17:25:28 +0200;