| 1 | 1 |
new file mode 100644 |
| ... | ... |
@@ -0,0 +1,39 @@ |
| 1 |
+% Generated by roxygen2: do not edit by hand |
|
| 2 |
+% Please edit documentation in R/gep2pep.R |
|
| 3 |
+\name{makeCollectionIDs}
|
|
| 4 |
+\alias{makeCollectionIDs}
|
|
| 5 |
+\title{Creates a vector of collection labels for each pathway.}
|
|
| 6 |
+\usage{
|
|
| 7 |
+makeCollectionIDs(gmds) |
|
| 8 |
+} |
|
| 9 |
+\arguments{
|
|
| 10 |
+\item{gmds}{A pathway database in the same format as created by
|
|
| 11 |
+\code{importMSigDB.xml}.}
|
|
| 12 |
+} |
|
| 13 |
+\value{
|
|
| 14 |
+A vector of identifiers, one per pathway, with the format: |
|
| 15 |
+ "db_subdb". |
|
| 16 |
+} |
|
| 17 |
+\description{
|
|
| 18 |
+Creates a vector of collection labels for each pathway. |
|
| 19 |
+} |
|
| 20 |
+\details{
|
|
| 21 |
+This function is useful to subset a database of pathway by |
|
| 22 |
+ collections. |
|
| 23 |
+} |
|
| 24 |
+\examples{
|
|
| 25 |
+db <- readRDS(system.file("testgmd.RDS", package="gep2pep"))
|
|
| 26 |
+ids <- makeCollectionIDs(db) |
|
| 27 |
+ |
|
| 28 |
+unique(ids) |
|
| 29 |
+## [1] "C3_TFT" "C3_MIR" "C4_CGN" |
|
| 30 |
+ |
|
| 31 |
+db <- db[ids=="C3_MIR"] |
|
| 32 |
+ |
|
| 33 |
+length(db) |
|
| 34 |
+## [1] 10 |
|
| 35 |
+ |
|
| 36 |
+} |
|
| 37 |
+\seealso{
|
|
| 38 |
+importMSigDB.xml |
|
| 39 |
+} |
