1. Rhisat2
  2. Graph
Graph of Rhisat2
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  • 7cc7c68 (HEAD -> devel, origin/devel, origin/HEAD) Update actions/cache by Charlotte Soneson <charlottesoneson@gmail.com> 2024-12-21 19:07:48 +0100;
  • 4339db7 (origin/master) Merge remote-tracking branch 'upstream/devel' into devel by Charlotte Soneson <charlottesoneson@gmail.com> 2024-11-02 16:52:03 +0100;
  • 695fc7d bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:34:09 -0400;
  • 4d2c209 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:34:09 -0400;
  • 526dbf1 Use devel version of pak by Charlotte Soneson <charlottesoneson@gmail.com> 2024-05-18 10:00:04 +0200;
  • 2949c9d Use setup-r-dependencies action on Linux by Charlotte Soneson <charlottesoneson@gmail.com> 2024-05-17 09:35:58 +0200;
  • d4554a0 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:11:59 -0400;
  • 5205ee6 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:11:59 -0400;
  • 78b0b28 Merge pull request <a href="#6">#6</a> from fmicompbio/txdbmaker by Charlotte Soneson <charlottesoneson@gmail.com> 2024-03-14 14:12:11 +0100;
  • 05db34a Update NEWS by Charlotte Soneson <charlottesoneson@gmail.com> 2024-03-14 13:37:00 +0100;
  • f8d43c0 Use txdbmaker instead of GenomicFeatures by Charlotte Soneson <charlottesoneson@gmail.com> 2024-03-14 13:21:22 +0100;
  • e49c3fa Trigger GHA by Charlotte Soneson <charlottesoneson@gmail.com> 2024-03-14 08:41:59 +0100;
  • 6b6c25c Version bump, swap GenomicFeatures for txdbmaker by Charlotte Soneson <charlottesoneson@gmail.com> 2024-03-13 22:13:42 +0100;
  • ae6ac03 Remove linux-arm64 docker image from GHA by Charlotte Soneson <charlottesoneson@gmail.com> 2023-11-22 15:28:04 +0100;
  • 94e772c Try adding linux arm64 container by Charlotte Soneson <charlottesoneson@gmail.com> 2023-11-22 08:25:42 +0100;
  • d05befa Merge pull request <a href="#5">#5</a> from fmicompbio/aarch64_fix by Charlotte Soneson <charlottesoneson@gmail.com> 2023-11-21 11:21:38 +0100;
  • 43da634 Trigger GHA by Charlotte Soneson <charlottesoneson@gmail.com> 2023-11-21 09:39:25 +0100;
  • 5bf02ca Update DESCRIPTION, NEWS and README by Charlotte Soneson <charlottesoneson@gmail.com> 2023-11-20 17:00:53 +0100;
  • a0f27b0 detect aarch64 in Makefile, and make mask2iupac signed char by mbstadler <stadler.michael@gmail.com> 2023-11-20 16:38:21 +0100;
  • 0cd765f Merge remote-tracking branch 'upstream/devel' into devel by Charlotte Soneson <charlottesoneson@gmail.com> 2023-10-24 19:54:52 +0200;
  • e163181 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:10:24 -0400;
  • 64f4e58 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:10:24 -0400;
  • 1a71844 GHA: Update gfortran symlink by Charlotte Soneson <charlottesoneson@gmail.com> 2023-06-24 20:21:50 +0200;
  • 934bf57 Update GHA workflow by Charlotte Soneson <charlottesoneson@gmail.com> 2023-05-13 09:48:20 +0200;
  • 998a780 Merge remote-tracking branch 'upstream/devel' into devel by Charlotte Soneson <charlottesoneson@gmail.com> 2023-04-26 09:42:18 +0200;
  • e8f3c97 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:07:12 -0400;
  • e0da195 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:07:12 -0400;
  • 57a426c Merge pull request <a href="#4">#4</a> from fmicompbio/fix-xcode by Charlotte Soneson <charlottesoneson@gmail.com> 2023-01-02 10:30:38 +0100;
  • 91e2337 Select Xcode version by Charlotte Soneson <charlottesoneson@gmail.com> 2023-01-02 09:39:26 +0100;
  • e092493 GHA: Print version of Xcode CLTools by Charlotte Soneson <charlottesoneson@gmail.com> 2022-12-09 09:48:41 +0100;
  • 2c5b07d Merge remote-tracking branch 'upstream/master' by Charlotte Soneson <charlottesoneson@gmail.com> 2022-11-01 21:59:49 +0100;
  • c237dc8 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:19:06 -0400;
  • 7b73d3d (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:19:06 -0400;
  • ba8a4ea Change version of r-lib action by Charlotte Soneson <charlottesoneson@gmail.com> 2022-10-21 10:45:48 +0200;
  • 9d4c4cd Merge pull request <a href="#3">#3</a> from fmicompbio/new-hisat2 by Charlotte Soneson <charlottesoneson@gmail.com> 2022-08-19 09:42:08 +0200;
  • 6321471 remove unexpected phase information from stop_codon to resolve test warning from GenomicFeatures:::.get_cds_IDX by mbstadler <stadler.michael@gmail.com> 2022-08-19 09:02:57 +0200;
  • 89194dd add missing D for compiler defs by mbstadler <stadler.michael@gmail.com> 2022-08-19 08:19:26 +0200;
  • 090f27e move SIMDE constant definition into conditional by mbstadler <stadler.michael@gmail.com> 2022-08-19 07:55:34 +0200;
  • adfe6b6 fix typo by mbstadler <stadler.michael@gmail.com> 2022-08-19 07:54:55 +0200;
  • b9d252c clean up GHA by mbstadler <stadler.michael@gmail.com> 2022-08-19 07:46:35 +0200;
  • 9d4a2fe Fix also sse_util.h by Charlotte Soneson <charlottesoneson@gmail.com> 2022-08-18 21:51:28 +0200;
  • edede8b Don't include simde on Windows by Charlotte Soneson <charlottesoneson@gmail.com> 2022-08-18 20:20:06 +0200;
  • c65f2b0 run R CMD check using rcmdcheck by mbstadler <stadler.michael@gmail.com> 2022-08-16 09:48:39 +0200;
  • 9c39bd4 fix indentation by mbstadler <stadler.michael@gmail.com> 2022-08-15 16:39:05 +0200;
  • 97157d1 wrap failure() in eval braces by mbstadler <stadler.michael@gmail.com> 2022-08-15 16:37:48 +0200;
  • cd1bd8e remove leading digits from names by mbstadler <stadler.michael@gmail.com> 2022-08-15 16:37:00 +0200;
  • 090dd54 try out hard-coded install-out file name by mbstadler <stadler.michael@gmail.com> 2022-08-15 16:35:01 +0200;
  • beac25c print install and check logs from any location by mbstadler <stadler.michael@gmail.com> 2022-08-15 16:14:27 +0200;
  • 698aa66 remove non-existing check path from upload action by mbstadler <stadler.michael@gmail.com> 2022-08-15 15:41:16 +0200;
  • 16c8756 add id to build-install-check and use check-dir return value in upload-artifact by mbstadler <stadler.michael@gmail.com> 2022-08-15 14:57:27 +0200;
  • f4987ba add details about simde header library by mbstadler <stadler.michael@gmail.com> 2022-08-15 14:49:27 +0200;
  • bfce545 apply simde patches from http://deb.debian.org/debian/pool/main/h/hisat2/hisat2_2.2.1-3.debian.tar.xz and include SIMDe header library to support SSE functions on ARM by mbstadler <stadler.michael@gmail.com> 2022-08-10 09:33:32 +0200;
  • b1a15e3 correct VERSION file references to renamed file name (VERSION_HS) by mbstadler <stadler.michael@gmail.com> 2022-08-10 08:43:05 +0200;
  • f3d6a63 rename VERSION file to prevent incorrect inclusion by mbstadler <stadler.michael@gmail.com> 2022-08-10 08:35:07 +0200;
  • cb6140b Clarify Makefile changes by Charlotte Soneson <charlottesoneson@gmail.com> 2022-08-02 13:41:49 +0200;
  • feafa29 Change to Rtools 4.2 by Charlotte Soneson <charlottesoneson@gmail.com> 2022-08-02 13:34:01 +0200;
  • e1c4cad Update to hisat2 v2.2.1 by Charlotte Soneson <charlottesoneson@gmail.com> 2022-08-01 14:08:49 +0200;
  • 2130a05 Add more unit tests by Charlotte Soneson <charlottesoneson@gmail.com> 2022-08-01 13:39:10 +0200;
  • 604c908 Update NEWS and README by Charlotte Soneson <charlottesoneson@gmail.com> 2022-08-01 13:35:34 +0200;
  • 526ca61 Bump version by Charlotte Soneson <charlottesoneson@gmail.com> 2022-08-01 13:28:38 +0200;
  • c9596d4 Change check directory path by Charlotte Soneson <charlottesoneson@gmail.com> 2022-05-14 09:50:29 +0200;
  • b7b43fc Use Bioc actions by Charlotte Soneson <charlottesoneson@gmail.com> 2022-05-13 11:53:44 +0200;
  • 74e86cc Merge remote-tracking branch 'upstream/master' by Charlotte Soneson <charlottesoneson@gmail.com> 2022-04-30 11:40:21 +0200;
  • 51eca5a bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:52:48 +0000;
  • 8a93852 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:52:48 +0000;
  • e6f69a9 Starting with BioC 3.15 + R 4.2, 32-bit Windows is no longer supported so Windows builds are single arch only (i.e. 64-bit only) by Hervé Pagès <hpages.on.github@gmail.com> 2021-12-16 12:57:30 -0800;
  • e9c3cc9 Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-21 00:48:30 -0500;
  • 2040e50 Use R devel on GHA by Charlotte Soneson <charlottesoneson@gmail.com> 2021-10-30 10:41:57 +0200;
  • f0e41f8 Merge remote-tracking branch 'upstream/master' by Charlotte Soneson <charlottesoneson@gmail.com> 2021-10-27 08:52:09 +0200;
  • fcadea8 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:49:00 +0000;
  • c16857e (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:49:00 +0000;
  • 64e8ce2 Don't use RSPM on GHA by Charlotte Soneson <charlottesoneson@gmail.com> 2021-10-03 19:09:26 +0200;
  • 78bc3d8 Use ubuntu 16.04 in GHA by Charlotte Soneson <charlottesoneson@gmail.com> 2021-08-06 14:12:34 +0200;
  • dc9130a Use R 4.1 on GHA by Charlotte Soneson <charlottesoneson@gmail.com> 2021-05-20 15:03:50 +0200;
  • cf69dbb Merge remote-tracking branch 'upstream/master' by Charlotte Soneson <charlottesoneson@gmail.com> 2021-05-20 15:03:14 +0200;
  • 411aa77 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:40:25 +0000;
  • d0f4299 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:40:25 +0000;
  • 668fbb9 gfortran symlink GHA by Charlotte Soneson <charlottesoneson@gmail.com> 2021-01-29 12:43:28 +0100;
  • 084a1b8 Install gfortran (mac) by Charlotte Soneson <charlottesoneson@gmail.com> 2021-01-21 18:04:22 +0100;
  • 1aed676 Change the alias by Charlotte Soneson <charlottesoneson@gmail.com> 2021-01-21 17:34:38 +0100;
  • 7a9a159 Set gfortran alias by Charlotte Soneson <charlottesoneson@gmail.com> 2021-01-21 17:16:24 +0100;
  • 434d8ce Try setting gfortran symlink by Charlotte Soneson <charlottesoneson@gmail.com> 2021-01-21 16:40:08 +0100;
  • 8db2dca Revert commit by Charlotte Soneson <charlottesoneson@gmail.com> 2020-12-04 10:18:10 +0100;
  • 72c1359 Remove macOS-11.0 by Charlotte Soneson <charlottesoneson@gmail.com> 2020-12-04 10:04:12 +0100;
  • 6e496a0 Add macOS-11.0 to GHA by Charlotte Soneson <charlottesoneson@gmail.com> 2020-12-04 09:42:05 +0100;
  • d5f1b00 Set curl-config path in GHA by Charlotte Soneson <charlottesoneson@gmail.com> 2020-11-26 21:05:27 +0100;
  • b19ff01 Remove travis by Charlotte Soneson <charlottesoneson@gmail.com> 2020-11-02 10:59:27 +0100;
  • 8c28bdc Fix GHA by Charlotte Soneson <charlottesoneson@gmail.com> 2020-11-01 09:59:36 +0100;
  • 41c9dd4 Use R-devel for GHA by Charlotte Soneson <charlottesoneson@gmail.com> 2020-10-28 21:53:52 +0100;
  • 12dbbf5 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:41:46 -0400;
  • b93a9b6 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:41:46 -0400;
  • 6325bce Merge branch 'master' of https://github.com/fmicompbio/Rhisat2 by Charlotte Soneson <charlottesoneson@gmail.com> 2020-10-01 17:28:12 +0200;
  • 5764eb0 Clean up GHA by Charlotte Soneson <charlottesoneson@gmail.com> 2020-10-01 17:27:57 +0200;
  • 11dafec delete appveyor.yml by Michael Stadler <stadler.michael@gmail.com> 2020-09-07 10:59:18 +0200;
  • 77c3150 Fix actions by Charlotte Soneson <charlottesoneson@gmail.com> 2020-08-26 10:52:22 +0200;
  • 8bd4c80 Print compiler flags in GHA by Charlotte Soneson <charlottesoneson@gmail.com> 2020-08-26 10:42:53 +0200;
  • 973ff12 Tweak GHA builds by Charlotte Soneson <charlottesoneson@gmail.com> 2020-08-25 15:54:13 +0200;
  • 36b88e0 Add additional output for debugging by Charlotte Soneson <charlottesoneson@gmail.com> 2020-08-25 15:36:23 +0200;
  • 8f7abab Use ubuntu 20.04 in actions by Charlotte Soneson <charlottesoneson@gmail.com> 2020-08-25 13:48:25 +0200;
  • 254b67d Add R-devel to build matrix by Charlotte Soneson <charlottesoneson@gmail.com> 2020-08-25 13:40:14 +0200;