1. Rhisat2
  2. Commit cb6140bade0c6388c871ddc21a4df2dc237a1f8f
Browse code

Clarify Makefile changes

Charlotte Soneson authored on 02/08/2022 11:41:49
Showing 2 changed files
src/Makefile
History View file @ cb6140b
... ... 
@@ -22,11 +22,12 @@
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 # edited as part of Rhisat2:
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 # - set BITS=64 (comment parts that are related to setting BITS)
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 # - removed files:
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-#   from HISAT_BIN_LIST:
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+#   from HISAT2_BIN_LIST:
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 #     hisat2-build-l
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 #     hisat2-align-l
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 #     hisat2-inspect-s
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 #     hisat2-inspect-l
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+#     hisat2-repeat
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 #   from HISAT2_BIN_LIST_AUX:
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 #     hisat2-build-s-debug
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 #     hisat2-build-l-debug
... ... 
@@ -34,15 +35,11 @@
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 #     hisat2-align-l-debug
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 #     hisat2-inspect-s-debug
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 #     hisat2-inspect-l-debug
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+#     hisat2-repeat-debug
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 #   from GENERAL_LIST:
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 #     $(wildcard scripts/*.sh)
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 #     $(wildcard scripts/*.pl)
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 #     $(wildcard *.py)
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-#     $(wildcard hisatgenotype_modules/*.py)
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-#     $(wildcard hisatgenotype_scripts/*.py)
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-#     doc/manual.inc.html
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-#     doc/README
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-#     doc/style.css
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 #     $(wildcard example/index/*.ht2)
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 #     $(wildcard example/reads/*.fa)
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 #     example/reference/22_20-21M.fa
src/Makefile.win
History View file @ cb6140b
... ... 
@@ -22,11 +22,12 @@
22 22 
 # edited as part of Rhisat2:
23 23 
 # - set BITS=64 (comment parts that are related to setting BITS)
24 24 
 # - removed files:
25 
-#   from HISAT_BIN_LIST:
25 
+#   from HISAT2_BIN_LIST:
26 26 
 #     hisat2-build-l
27 27 
 #     hisat2-align-l
28 28 
 #     hisat2-inspect-s
29 29 
 #     hisat2-inspect-l
30 
+#     hisat2-repeat
30 31 
 #   from HISAT2_BIN_LIST_AUX:
31 32 
 #     hisat2-build-s-debug
32 33 
 #     hisat2-build-l-debug
... ... 
@@ -34,15 +35,11 @@
34 35 
 #     hisat2-align-l-debug
35 36 
 #     hisat2-inspect-s-debug
36 37 
 #     hisat2-inspect-l-debug
38 
+#     hisat2-repeat-debug
37 39 
 #   from GENERAL_LIST:
38 40 
 #     $(wildcard scripts/*.sh)
39 41 
 #     $(wildcard scripts/*.pl)
40 42 
 #     $(wildcard *.py)
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-#     $(wildcard hisatgenotype_modules/*.py)
42 
-#     $(wildcard hisatgenotype_scripts/*.py)
43 
-#     doc/manual.inc.html
44 
-#     doc/README
45 
-#     doc/style.css
46 43 
 #     $(wildcard example/index/*.ht2)
47 44 
 #     $(wildcard example/reads/*.fa)
48 45 
 #     example/reference/22_20-21M.fa