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# Ensemble of Gene Set Enrichment Analyses <div align="center"> <img src="inst/logo/EGSEA_logo.png" align="middle" width=250 /> <br /> <sub>Credit: Roberto Bonelli </sub> </div> This package is part of the **Bioconductor** project and implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing. **Author:** Monther Alhamdoosh, Luyi Tian, Milica Ng and Matthew Ritchie **Maintainer:** Monther Alhamdoosh <m.hamdoosh at> Citation (from within R, enter ```citation("EGSEA")```): Alhamdoosh M, Ng M, Wilson N, Sheridan J, Huynh H, Wilson M and Ritchie M (2017). “Combining multiple tools outperforms individual methods in gene set enrichment analyses.” *Bioinformatics*, 33(3). doi: 10.1093/bioinformatics/btw623. Alhamdoosh M, Law CW, Tian L et al. Easy and efficient ensemble gene set testing with EGSEA [version 1; peer review: 1 approved, 3 approved with reservations]. F1000Research 2017, 6:2010. doi: 10.12688/f1000research.12544.1 # Installation To install the *stable release* of this package, start R and enter: ```{r} ## try http:// if https:// URLs are not supported if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("EGSEA") ``` To install the *development version* of this package, start R and enter: ```{r} install.packages("devtools") # if you have not installed "devtools" package devtools::install_github("malhamdoosh/EGSEA") ``` # Documentation To view documentation for the version of this package installed in your system, start R and enter: ```{r} browseVignettes("EGSEA") ```