Package: EGSEA
Title: Ensemble of Gene Set Enrichment Analyses
Version: 1.31.0
Date: 12-10-2021
Author: Monther Alhamdoosh, Luyi Tian, Milica Ng and Matthew Ritchie
Maintainer: Monther Alhamdoosh <m.hamdoosh@gmail.com>
Description: This package implements the Ensemble of Gene Set Enrichment
    Analyses (EGSEA) method for gene set testing.
biocViews: ImmunoOncology, DifferentialExpression, GO, GeneExpression,
        GeneSetEnrichment, Genetics, Microarray, MultipleComparison,
        OneChannel, Pathways, RNASeq, Sequencing, Software,
        SystemsBiology, TwoChannel,Metabolomics, 
        Proteomics, KEGG, GraphAndNetwork,
        GeneSignaling, GeneTarget, NetworkEnrichment, Network,
      Classification
Depends: R (>= 3.5), Biobase, gage (>= 2.14.4), 
		AnnotationDbi, topGO (>= 2.16.0), pathview (>= 1.4.2)
Imports: PADOG (>= 1.6.0), GSVA (>= 1.12.0),
        globaltest (>= 5.18.0), limma (>= 3.20.9), edgeR (>= 3.6.8),
        HTMLUtils (>= 0.1.5), hwriter (>= 1.2.2),
        gplots (>= 2.14.2), ggplot2 (>= 1.0.0), safe (>= 3.4.0), 
        stringi (>= 0.5.0), 
        parallel, stats, metap, grDevices, graphics, utils,
        org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, RColorBrewer, methods,
        EGSEAdata (>= 1.3.1),
        htmlwidgets, plotly, DT
License: GPL-3
LazyLoad: yes
NeedsCompilation: no
Suggests: BiocStyle, knitr, testthat
VignetteBuilder: knitr
RoxygenNote: 6.0.1