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README.md
# scFeatureFilter By Angeles Arzalluz-Luque, Guillaume Devailly, Anna Mantsoki & Anagha Joshi. ![scFeatureFilter outputs](inst/figure1_small.png) An R package to set thresholds for feature (gene, transcript, ...) filtering in single cell RNA sequencing analyses. # How to install? You can install the stable version of scFeatureFilter from Bioconductor (Require R version ≥ 3.5): ```R ## try http:// if https:// URLs are not supported if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("scFeatureFilter") ``` You can install the development version of scFeatureFilter using `devtools` (Require R version ≥ 3.5): ```R devtools::install_github("gdevailly/scFeatureFilter") ``` # Getting started Load the package: ```R library(scFeatureFilter) ``` Then it is probably a good idea to read the package [vignette](https://gdevailly.github.io/scFeatureFilterVignette.html): ```R vignette("Introduction", package = "scFeatureFilter") ```