# psygenet2r `psygenet2r` is an R package for query PsyGeNET database (www.psygenet.org) and perform co-morbidity studies within R framework. ## What is this repository for? This report is used for package distribution while we walk thought BioConductor publication process. `psygenet2r` is already in Biocondcutor-devel. ## Package' Status * __Version__: 1.0.1 * __Authors__: Alba Gutierrez-Sacristan (GRIB-UPF), Carles Hernandez-Ferrer (CREAL) * __Maintainer__: Alba Gutierrez-Sacristan (GRIB-UPF) ## How to start ### Installation While BioCondutor finish updating the package, `psygenet2r` can be installed using `devtools` from this repository: ```R library(devtools) install_github("aGutierrezSacristan/psygenet2r") ``` ### Querying PsyGeNET: The following lines show two examples of how PsyGeNET can be queried using `psygenet2r`: * __Gene Query__ ```R library(psygenet2r) qg <- psygenetGene(gene = 4852, database = "ALL", check = FALSE ) ``` * __Disease Query__ ```R library(psygenet2r) qd <- psygenetDisease(disease = "schizophrenia", database = "ALL", evidenceIndex = c('>', 0.5) ) ```