- paxtoolsr
- Graph
-
5c7e0fb
(HEAD -> devel, origin/devel, origin/HEAD)
Deprecated - unresponsive by
lshep <lori.shepherd@roswellpark.org>
2024-12-17 11:06:13 -0500;
-
1b93a9d
(origin/master)
bump x.y.z version to odd y following creation of RELEASE_3_20 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2024-10-29 09:55:39 -0400;
-
1f68f19
(origin/RELEASE_3_20, RELEASE_3_20)
bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2024-10-29 09:55:39 -0400;
-
444550a
bump x.y.z version to odd y following creation of RELEASE_3_19 branch by
J Wokaty <jwokaty@users.noreply.github.com>
2024-04-30 10:39:35 -0400;
-
ee63aa1
(origin/RELEASE_3_19, RELEASE_3_19)
bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by
J Wokaty <jwokaty@users.noreply.github.com>
2024-04-30 10:39:35 -0400;
-
b0226d7
bump x.y.z version to odd y following creation of RELEASE_3_18 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2023-10-24 10:39:18 -0400;
-
efd04f2
(origin/RELEASE_3_18, RELEASE_3_18)
bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2023-10-24 10:39:18 -0400;
-
059017a
bump x.y.z version to odd y following creation of RELEASE_3_17 branch by
J Wokaty <jwokaty@users.noreply.github.com>
2023-04-25 10:35:26 -0400;
-
515aca5
(origin/RELEASE_3_17, RELEASE_3_17)
bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by
J Wokaty <jwokaty@users.noreply.github.com>
2023-04-25 10:35:26 -0400;
-
c30ddf3
bump x.y.z version to odd y following creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2022-11-01 11:10:30 -0400;
-
cecb363
(origin/RELEASE_3_16, RELEASE_3_16)
bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2022-11-01 11:10:30 -0400;
-
de45a88
bump x.y.z version to odd y following creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2022-04-26 15:22:07 +0000;
-
191ee3c
(origin/RELEASE_3_15, RELEASE_3_15)
bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2022-04-26 15:22:07 +0000;
-
299332b
Starting with BioC 3.15 + R 4.2, 32-bit Windows is no longer supported so Windows builds are single arch only (i.e. 64-bit only) by
Hervé Pagès <hpages.on.github@gmail.com>
2021-12-16 13:42:59 -0800;
-
cefce6a
bump x.y.z version to odd y following creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2021-10-26 16:16:43 +0000;
-
ccd6010
(origin/RELEASE_3_14, RELEASE_3_14)
bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2021-10-26 16:16:43 +0000;
-
a040cb2
Version change by
cannin <cannin@gmail.com>
2021-10-25 11:11:27 -0400;
-
3a5e95c
Update .BBSoptions by
Augustin Luna <cannin@gmail.com>
2021-10-25 11:08:07 -0400;
-
04e1346
Remove cache from GitHub Actions by
Augustin Luna <cannin@gmail.com>
2021-10-22 09:23:44 -0400;
-
2f9b279
Update R-CMD-check.yaml by
Augustin Luna <cannin@gmail.com>
2021-10-22 08:33:21 -0400;
-
6c0dd8f
Update R-CMD-check.yaml by
Augustin Luna <cannin@gmail.com>
2021-10-22 08:28:32 -0400;
-
3a34f47
Merge branch 'master' of https://github.com/BioPAX/paxtoolsr into master by
cannin <cannin@gmail.com>
2021-10-22 08:20:19 -0400;
-
-
10fc6bc
Update R-CMD-check.yaml by
Augustin Luna <cannin@gmail.com>
2021-10-22 08:19:27 -0400;
-
407e7db
Remove check for Java by
cannin <cannin@gmail.com>
2021-10-22 08:15:11 -0400;
-
-
57d3592
Change to cat() to paste0() by
cannin <cannin@gmail.com>
2021-10-14 11:14:32 -0400;
-
2ae0511
Changed to title case by
cannin <cannin@gmail.com>
2021-10-14 11:13:01 -0400;
-
1328218
Move Java startup message by
cannin <cannin@gmail.com>
2021-10-14 08:56:39 -0400;
-
b22252c
Update DESCRIPTION by
cannin <cannin@gmail.com>
2021-10-05 23:34:33 -0400;
-
ab7eef4
Added extra java check by
cannin <cannin@gmail.com>
2021-10-04 11:49:38 -0400;
-
c48336b
Update version by
cannin <cannin@gmail.com>
2021-09-16 22:21:16 -0400;
-
bc05330
Merge remote-tracking branch 'upstream/master' into master by
cannin <cannin@gmail.com>
2021-09-16 22:18:13 -0400;
-
-
5fedb3b
Update README.md by
Augustin Luna <cannin@gmail.com>
2021-08-28 23:15:12 -0400;
-
7502305
Recursive directory creation by
cannin <cannin@gmail.com>
2021-08-28 21:49:23 -0400;
-
f810dd5
Fix title by
cannin <cannin@gmail.com>
2021-08-28 21:23:27 -0400;
-
4c198ac
Updated DESCRIPTION Added rappdirs for caching Removed githubusercontent link by
cannin <cannin@gmail.com>
2021-08-28 21:22:17 -0400;
-
4c0ffd8
Matrix changes by
Augustin Luna <cannin@gmail.com>
2021-08-28 20:42:29 -0400;
-
c5c8ef7
Ensure UTF-8 encoding by
Augustin Luna <cannin@gmail.com>
2021-08-28 20:22:47 -0400;
-
04ef92a
Remove specific Windows Java checks by
Augustin Luna <cannin@gmail.com>
2021-08-28 19:05:20 -0400;
-
b597cd6
Remove multiarch Windows; add Java debugging by
Augustin Luna <cannin@gmail.com>
2021-08-28 19:02:39 -0400;
-
1c1196b
Update R-CMD-check.yaml by
Augustin Luna <cannin@gmail.com>
2021-08-28 18:49:39 -0400;
-
aa4cbc7
Modify to Java 16 (few flavors support 14) by
Augustin Luna <cannin@gmail.com>
2021-08-28 18:40:25 -0400;
-
81a8b8d
Add libcurl by
Augustin Luna <cannin@gmail.com>
2021-08-28 18:09:19 -0400;
-
6f186c0
Remove OS specific R CMD CHECK by
Augustin Luna <cannin@gmail.com>
2021-08-28 14:14:41 -0400;
-
418b08b
Added install dependencies by
Augustin Luna <cannin@gmail.com>
2021-08-28 11:22:57 -0400;
-
dd55eae
Update R-CMD-check.yaml by
Augustin Luna <cannin@gmail.com>
2021-08-28 08:45:48 -0400;
-
9ed2638
Update R-CMD-check.yaml by
Augustin Luna <cannin@gmail.com>
2021-08-27 21:21:33 -0400;
-
8fb5ede
Create R-CMD-check.yaml by
Augustin Luna <cannin@gmail.com>
2021-08-27 21:11:01 -0400;
-
6f6d48d
Delete .travis.yml by
Augustin Luna <cannin@gmail.com>
2021-08-27 21:01:21 -0400;
-
a3516f0
Update README.md by
Augustin Luna <cannin@gmail.com>
2021-08-13 11:24:58 -0400;
-
06ca9af
bump x.y.z version to odd y following creation of RELEASE_3_13 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2021-05-19 16:08:34 +0000;
-
7635a83
(origin/RELEASE_3_13, RELEASE_3_13)
bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2021-05-19 16:08:34 +0000;
-
412052c
bump x.y.z version to odd y following creation of RELEASE_3_12 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2020-10-27 10:59:49 -0400;
-
24770ee
(origin/RELEASE_3_12, RELEASE_3_12)
bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2020-10-27 10:59:49 -0400;
-
84cb775
unsupported on 32-bit Windows (no more JDK for 32-bit Windows) by
Hervé Pagès <hpages@fredhutch.org>
2020-09-01 12:36:32 -0700;
-
d4da1f4
bump x.y.z version to odd y following creation of RELEASE_3_11 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2020-04-27 18:44:11 +0000;
-
e4c4062
(origin/RELEASE_3_11, RELEASE_3_11)
bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2020-04-27 18:44:11 +0000;
-
-
3ee3122
Updated version by
cannin <cannin@gmail.com>
2020-03-11 14:58:18 -0400;
-
badd666
Merge remote-tracking branch 'upstream/master' by
cannin <cannin@gmail.com>
2020-03-11 08:35:01 -0400;
-
-
bc09a8c
Update using_paxtoolsr.Rmd by
Augustin Luna <cannin@gmail.com>
2020-03-11 08:32:30 -0400;
-
3902d85
Re-did example enrichment analysis with clusterProfiler Switched from class() == to is() == Switched to seq_along() in some cases Made some lines < 80 characters Removed convertIds in favor of clusterProfiler::bitr() Moved convertPathwayList to ignore Added new GMT examples from PC12 Added knitr YAML metadata by
cannin <cannin@gmail.com>
2020-03-11 08:08:11 +0000;
-
435b178
bump x.y.z version to odd y after creation of RELEASE_3_10 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2019-10-29 13:38:20 -0400;
-
bd307cf
(origin/RELEASE_3_10, RELEASE_3_10)
bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2019-10-29 13:09:05 -0400;
-
76b73ed
Comments on function by
cannin <cannin@gmail.com>
2019-09-10 19:36:46 -0400;
-
da2ea86
Merge branch 'master' of https://github.com/BioPAX/paxtoolsr by
cannin <cannin@gmail.com>
2019-09-10 19:21:55 -0400;
-
-
803f09d
Minor update documentation Fixed readGmt to read name by
cannin <cannin@gmail.com>
2019-09-10 19:21:46 -0400;
-
eb1e3bc
Check file names from newer PC versions by
cannin <cannin@gmail.com>
2019-08-15 08:33:25 -0400;
-
03ae9e9
Update README.md by
Augustin Luna <cannin@gmail.com>
2019-07-23 10:43:34 +0200;
-
-
f821464
bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2019-05-02 12:11:49 -0400;
-
204b6d8
(origin/RELEASE_3_9, RELEASE_3_9)
bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2019-05-02 11:53:49 -0400;
-
46f3ef6
bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by
vobencha <vobencha@gmail.com>
2018-10-30 11:54:33 -0400;
-
b009b3d
(origin/RELEASE_3_8, RELEASE_3_8)
bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by
vobencha <vobencha@gmail.com>
2018-10-30 11:41:55 -0400;
-
-
043ed7b
Changed figure sizes by
cannin <cannin@gmail.com>
2018-10-02 12:03:58 -0400;
-
364d4a8
Removed paxtoolsr.Rproj by
cannin <cannin@gmail.com>
2018-10-01 10:56:54 -0400;
-
e9707b2
Fixed import issue by
cannin <cannin@gmail.com>
2018-09-20 05:34:14 -0400;
-
f500f63
Merge remote-tracking branch 'upstream/master' by
cannin <cannin@gmail.com>
2018-09-20 05:03:03 -0400;
-
-
f507eba
Updated .Rbuildignore Replaced data.table with readr Removed incomplete functions Added examples Added importFrom statements Updated reading for PCV10; with an attempt to be backwards compatible Updated getPcDatabasesNames for recent file name changes Added additional headers to deal with PC API issues: XML vs JSON return Switched to query parameter for PC API calls with httr rather than URL creation Removed skip_on_bioc since now in testthat Expanded pcFormats Expanded checkInputFile with additional checks Updated pathways.txt.gz example file by
cannin <cannin@gmail.com>
2018-09-20 04:51:31 -0400;
-
b80855d
replace BiocInstaller biocLite mentions with BiocManager by
LiNk-NY <mramos09@gmail.com>
2018-08-30 13:53:50 -0400;
-
66cfd38
Merge remote-tracking branch 'upstream/master' by
cannin <cannin@gmail.com>
2018-08-27 13:37:55 -0400;
-
-
4d0b9d5
Merge branch 'master' of https://github.com/cannin/paxtoolsr by
cannin <cannin@gmail.com>
2018-08-09 21:27:54 -0400;
-
-
025b78d
URL encode user inputs to traverse by
cannin <cannin@gmail.com>
2018-07-23 16:02:55 -0400;
-
742bbec
Moved results creation for large files so that the code can find nodes by
cannin <cannin@gmail.com>
2018-07-23 15:33:39 -0400;
-
8aa44c0
bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by
vobencha <valerie.obenchain@roswellpark.org>
2018-04-30 10:41:40 -0400;
-
e20a1a7
(origin/RELEASE_3_7, RELEASE_3_7)
bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by
vobencha <valerie.obenchain@roswellpark.org>
2018-04-30 10:35:34 -0400;
-
39c9a05
Added sub-pathway names to readPcPathwaysInfo Renamed pathways.txt.gz Changed documentation to force version information in downloadPc2 by
cannin <cannin@gmail.com>
2018-01-11 17:13:44 -0500;
-
-
ef55749
Added convertToDataFrameWithListOfVectors (opposite also included) Removed default version in downloadPc2 (current no longer works) Deleted idMapping since it was removed (also from vignette) Added readSifnxSmall for small SIFNX by
cannin <cannin@gmail.com>
2018-01-11 13:52:27 -0500;
-
1d15f82
bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by
Hervé Pagès <hpages@fredhutch.org>
2017-10-30 12:53:46 -0400;
-
4bf56d9
(origin/RELEASE_3_6, RELEASE_3_6)
bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by
Hervé Pagès <hpages@fredhutch.org>
2017-10-30 12:40:41 -0400;
-
7448380
bump x.y.z versions to odd y after creation of 3_5 branch by
Herve Pages <hpages@fhcrc.org>
2017-04-24 19:50:57 +0000;
-
9542d22
(origin/RELEASE_3_5, RELEASE_3_5)
Creating branch for BioC 3.5 release by
Herve Pages <hpages@fhcrc.org>
2017-04-24 19:45:44 +0000;
-
-
0a728ce
bump x.y.z versions to even y prior to creation of 3_5 branch by
Herve Pages <hpages@fhcrc.org>
2017-04-24 19:25:24 +0000;
-
342700d
Removed idMapping function that no longer works by
Augustin Luna <lunaa@cbio.mskcc.org>
2017-04-10 14:33:57 +0000;
-
3559497
toCytoscape added by
cannin <cannin@gmail.com>
2017-03-24 17:57:36 -0400;
-
194a6bf
Merge branch 'master' of https://github.com/cannin/paxtoolsr by
cannin <cannin@gmail.com>
2017-03-16 08:52:27 -0400;
-
-
f036a55
Minor by
cannin <cannin@gmail.com>
2017-03-16 08:52:13 -0400;
-
62aab50
Added readCombinedSifnxFile by
cannin <cannin@gmail.com>
2017-02-22 11:22:03 -0500;
-
f99d95c
Update .travis.yml by
Augustin Luna <cannin@gmail.com>
2016-12-10 19:30:53 -0500;
-
-
01b24fe
Updated Travis CI by
cannin <cannin@gmail.com>
2016-11-17 14:38:19 -0600;
-
2f46dab
Updated Travis CI by
cannin <cannin@gmail.com>
2016-11-17 14:23:03 -0600;
-
793911c
Updated Travis CI by
cannin <cannin@gmail.com>
2016-11-17 14:20:35 -0600;
-
e38e685
Fixed bug in reading 1 entry GMT files Minor documentation fixes by
cannin <cannin@gmail.com>
2016-11-17 13:34:02 -0600;