# pareg [](https://github.com/cbg-ethz/pareg/actions/workflows/lintr.yaml) [](https://github.com/cbg-ethz/pareg/actions/workflows/mega-linter.yaml) [](https://github.com/cbg-ethz/pareg/actions/workflows/check-bioc.yaml) [](https://github.com/cbg-ethz/pareg/actions/workflows/pkgdown.yaml) [](https://bioconductor.org/checkResults/devel/bioc-LATEST/pareg) Pathway enrichment computations using a regularized regression approach to incorporate inter-pathway relations in the statistical model. ## Installation Install the latest stable version from Bioconductor: ```r BiocManager::install("pareg") ``` Install the latest development version from GitHub: ```r remotes::install_github("cbg-ethz/pareg") ``` ## Project structure * `.`: R package * `inst/scripts/`: Snakemake workflows and other utilities ## Dev notes * Update `NAMESPACE` and write man pages: `Rscript -e "devtools::document()"` * Format code: `Rscript -e "styler::style_dir('.', transformers = biocthis::bioc_style())"`