1. multtest
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  • baeb862 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:20:53 -0400;
  • b2a4744 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:20:53 -0400;
  • d2d032b Added check that fscanf reads file correctly and error message if not by kspollard <kpollard@gladstone.ucsf.edu> 2024-10-17 13:10:14 -0700;
  • 1d45f73 Change Calloc and Free to R_Calloc and R_Free by kspollard <kpollard@gladstone.ucsf.edu> 2024-10-14 12:58:24 -0700;
  • bdb8df7 Changed Calloc and Free to R_Calloc and R_Free by kspollard <kpollard@gladstone.ucsf.edu> 2024-10-14 12:32:08 -0700;
  • 40bc39d bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:10:57 -0400;
  • bc08e7c (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:10:57 -0400;
  • 9c32120 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:31:33 -0400;
  • 523a966 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:31:33 -0400;
  • 2f8ffc3 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 09:38:25 -0400;
  • 6199757 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 09:38:25 -0400;
  • 49b5856 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 10:35:01 -0400;
  • 4e2c9e9 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 10:35:01 -0400;
  • 9dd2179 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 14:54:30 +0000;
  • 00cfc9b (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 14:54:30 +0000;
  • 74a6204 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:45:35 +0000;
  • 1de9664 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:45:35 +0000;
  • 426b717 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:32:42 +0000;
  • 5da1a87 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:32:42 +0000;
  • efb74be bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:21:50 -0400;
  • c4dd27b (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:21:49 -0400;
  • 7b9242a bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:07:54 +0000;
  • 22c3cd5 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:07:54 +0000;
  • 4a258ec fix the build error by Yongchao Ge <yongchao.ge@gmail.com> 2020-03-11 20:07:02 -0400;
  • 207570d bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:34:30 -0400;
  • 048f6b6 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:07:20 -0400;
  • 585933a bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:10:28 -0400;
  • 5f00017 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:01 -0400;
  • ad438a3 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:26 -0400;
  • 4dfe71c (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:40 -0400;
  • d33f19c bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:36 -0400;
  • babb15e (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:34:54 -0400;
  • b178d2f bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:04 -0400;
  • 6ef873e (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:38:11 -0400;
  • 06be86d bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • c5e890d (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • d7e47b2 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 9529b42 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 58cd625 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • a904b67 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 9c3b7df bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 83b59e2 (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • c7d95ec Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • f1fa512 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 595f770 (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 9cc6d73 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • a821984 change maintainer email address by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-06-23 22:23:28 +0000;
  • aac47b9 import BiocGenerics to get the as.list() S4 generic by Herve Pages <hpages@fhcrc.org> 2015-05-20 06:06:16 +0000;
  • c468753 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 7551cdf (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • fde9bad Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 5212f10 Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • d17dd92 (origin/RELEASE_3_0, RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • 4fb200f Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • 64ab0f6 Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • 2858a6e (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • fa6414f First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • 74ad4b0 modify to new biocViews to DESCRIPTION file by Sonali Arora <sarora@fhcrc.org> 2014-03-04 22:12:21 +0000;
  • 7461670 fixed typo in CITATION file (missing comma) by Katherine S. Pollard <kpollard@soe.ucsc.edu> 2014-01-10 01:11:12 +0000;
  • ad6f9fd Changed CITATION file to ASCII text by Katherine S. Pollard <kpollard@soe.ucsc.edu> 2014-01-06 19:27:52 +0000;
  • f1758b8 Added CITATION file by Katherine S. Pollard <kpollard@soe.ucsc.edu> 2013-12-20 18:00:13 +0000;
  • 33f3782 rename inst/doc to vignettes and bump version by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-11-01 19:48:40 +0000;
  • a299cc0 bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
  • 6e44866 (origin/RELEASE_2_13, RELEASE_2_13) Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
  • c313500 bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
  • 2ae25b1 Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
  • 1741478 (origin/RELEASE_2_12, RELEASE_2_12) Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
  • a8b3d15 bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
  • b8d129a bump package versions after creating 2.11 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:43:56 +0000;
  • 58b5385 (origin/RELEASE_2_11, RELEASE_2_11) Creating branch for BioC 2.11 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:37:11 +0000;
  • fb15d43 Bump all packages before creating 2.11 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:16:24 +0000;
  • 076b3f0 edit to link in get.index.Rd by Katherine S. Pollard <kpollard@soe.ucsc.edu> 2012-08-22 20:08:29 +0000;
  • 64c0f85 fixed link to plot,MTP,ANY-method by Katherine S. Pollard <kpollard@soe.ucsc.edu> 2012-08-22 20:07:50 +0000;
  • 1e4b72b fixes to MTP-methods.Rd by Katherine S. Pollard <kpollard@soe.ucsc.edu> 2012-08-21 16:59:42 +0000;
  • 30a8173 changed alias for plot siglist to MTP,ANY and EBMTP,ANY to try to fix warning by Katherine S. Pollard <kpollard@soe.ucsc.edu> 2012-08-21 16:59:14 +0000;
  • caa3a83 added ANY to methods for plot in MTP-methods.Rd by Katherine S. Pollard <kpollard@soe.ucsc.edu> 2012-08-20 16:51:08 +0000;
  • 1f0bc6b added ANY to methods for plot by Katherine S. Pollard <kpollard@soe.ucsc.edu> 2012-08-20 16:50:27 +0000;
  • fd79a5b fixed nr and nc to be nrow and ncol by Katherine S. Pollard <kpollard@soe.ucsc.edu> 2012-08-17 15:25:44 +0000;
  • 27779da changed nr to nrow and nc to ncol by Katherine S. Pollard <kpollard@soe.ucsc.edu> 2012-08-15 19:57:10 +0000;
  • 3ec0e03 bumped version numbers after creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:15:56 +0000;
  • 0150bb9 (origin/RELEASE_2_10, RELEASE_2_10) Creating branch for BioC 2.10 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:10:45 +0000;
  • 4bb1924 first version bump prior to creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:05:02 +0000;
  • 27ee356 import plot and summary methods from stats4 instead of BiocGenerics by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-02 23:11:03 +0000;
  • 1e007e4 Fixes exporting methods errors for plot and summary by Marc Carlson <mcarlson@fhcrc.org> 2012-02-25 01:56:16 +0000;
  • 01ba053 Re-saved data files that were not sufficiently compressed, causing warnings in R CMD check. Data files were re-saved with "xz" compression, which was introduced in R 2.10, so the Depends field of DESCRIPTION was updated accordingly if necessary. Package version was bumped to trigger a new build. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-02-01 18:40:39 +0000;
  • bb08384 avoid use of assert() by Martin Morgan <mtmorgan@fhcrc.org> 2011-11-19 22:30:41 +0000;
  • b7045ed version bump for start of 2.10 development cycle by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:12:28 +0000;
  • d8cc84d (origin/RELEASE_2_9, RELEASE_2_9) Creating branch for BioC 2.9 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:05:58 +0000;
  • 705c732 bumped package version numbers prior to creating 2.9 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 22:59:03 +0000;
  • 3f5c641 fixed handling of NAs in the labels vector in bootstrap resampling, was creating a segfault in MTPALL vignette by Katherine S. Pollard <kpollard@soe.ucsc.edu> 2011-08-15 19:08:55 +0000;
  • 3ca49f1 fixed handling of NAs in the labels vector in bootstrap resampling, was creating a segfault in MTPALL vignette by Katherine S. Pollard <kpollard@soe.ucsc.edu> 2011-08-15 19:08:17 +0000;
  • c53f8fe Removing PDF versions of the vignettes (they get automatically built by the build system during 'R CMD build'), as well as other temporary/unneeded files. by Herve Pages <hpages@fhcrc.org> 2011-04-14 01:14:51 +0000;
  • 661ef8b (origin/RELEASE_2_8, RELEASE_2_8) Removing PDF versions of the vignettes (they get automatically built by the build system during 'R CMD build'), as well as other temporary/unneeded files. by Herve Pages <hpages@fhcrc.org> 2011-04-14 01:03:42 +0000;
  • 24141fe Bumped version numbers again for new BioC 2.9 devel cycle. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-04-13 22:36:43 +0000;
  • b084de2 Creating branch for BioC 2.8 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-04-13 22:32:21 +0000;
  • 09fe1f1 Bumped version numbers for BioC 2.8 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-04-13 22:27:35 +0000;
  • 41656f4 incremented version number for fix of matrix treated as list in boot.resample by Katherine S. Pollard <kpollard@soe.ucsc.edu> 2011-01-30 22:53:23 +0000;
  • baf2f4c fixed matrix treated as list in boot.resample for two-way F-test by Katherine S. Pollard <kpollard@soe.ucsc.edu> 2011-01-30 22:52:32 +0000;
  • 18214ba Bumped version numbers again for new BioC 2.8 devel cycle. ERRATA: Previous bump was for BioC 2.7 release (of course), not 2.6! by Herve Pages <hpages@fhcrc.org> 2010-10-18 05:57:44 +0000;
  • 152ffab (origin/RELEASE_2_7, RELEASE_2_7) Creating branch for BioC 2.7 release by Herve Pages <hpages@fhcrc.org> 2010-10-18 05:49:17 +0000;