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# miaViz <img src="man/figures/mia_logo.png" align="right" width="120" /> <!-- badges: start --> [![R-CMD-check-Bioc-devel](]( [![R-CMD-check-bioc](]( [![Bioc-release](]( [![Codecov test coverage](]( <!-- badges: end --> ## Microbiome Analysis Plotting and Visualization The scope of this package is the plotting and visualization of microbiome data. The main classes for interfacing is the `TreeSummarizedExperiment` class. ## Using the package Online tutorials and examples are available at: - [Package homepage]( - [Orchestrating microbiome analysis with R/Bioconductor online book]( ## Contribution Feel free to contribute by forking and opening a pull request. Please make sure that required data wrangling should be designed as reusable as possible and potentially find a better home in the [`mia`]( package. Additionally, please make sure that working examples are included and that vignetted make use of added functions in either `miaViz` or the [`TreeSummarizedExperiment`]( package. ## Technical aspects Let's use a git flow kind of approach. Development version should be done against the `master` branch and then merged to `release` for release. ( ## Installation ### Bioc-release ``` if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("miaViz") ``` ### Bioc-devel ``` if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("miaViz") ``` # Code of conduct Please note that the miaViz project is released with a [Contributor Code of Conduct]( By contributing to this project, you agree to abide by its terms.