# miaViz <img src="man/figures/mia_logo.png" align="right" width="120" />
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## Microbiome Analysis Plotting and Visualization
The scope of this package is the plotting and visualization of microbiome data.
The main classes for interfacing is the `TreeSummarizedExperiment` class.
## Using the package
Online tutorials and examples are available at:
- [Package homepage](https://microbiome.github.io/miaViz/)
- [Orchestrating microbiome analysis with R/Bioconductor online book](https://microbiome.github.io/OMA)
## Contribution
Feel free to contribute by forking and opening a pull request. Please make sure
that required data wrangling should be designed as reusable as possible and
potentially find a better home in the [`mia`](https://github.com/FelixErnst/mia)
package.
Additionally, please make sure that working examples are included and that
vignetted make use of added functions in either `miaViz` or the
[`TreeSummarizedExperiment`](https://github.com/fionarhuang/TreeSummarizedExperiment)
package.
## Technical aspects
Let's use a git flow kind of approach. Development version should be done
against the `master` branch and then merged to `release` for release.
(https://guides.github.com/introduction/flow/)
## Installation
### Bioc-release
```
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miaViz")
```
### Bioc-devel
```
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("miaViz")
```
# Code of conduct
Please note that the miaViz project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html).
By contributing to this project, you agree to abide by its terms.
