Bioconductor Code: lineagespot

Graph of lineagespot

9ae0440 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 11:08:16 -0400;
26240b0 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 11:08:16 -0400;
ae4993e bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:40:16 -0400;
e1f8b2b (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:40:15 -0400;
b217d34 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:39:30 -0400;
11817d6 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:39:30 -0400;
2f19015 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:35:52 -0400;
266146a (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:35:52 -0400;
22347a2 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:26:25 -0400;
e6fe834 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:26:25 -0400;
33bbec4 update maintainer by aspaor <aspasiaor@hotmail.com> 2022-05-17 16:59:35 +0300;
ee6b545 Update DESCRIPTION by aspaor <aspasiaor@hotmail.com> 2022-05-17 16:29:42 +0300;
c3a5982 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:21:13 +0000;
97c96e7 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:21:13 +0000;
53e30a5 check linux by unknown <nikosp41@gmail.com> 2022-04-07 10:16:29 +0300;
25bd112 update citation by unknown <nikosp41@gmail.com> 2022-03-23 13:03:34 +0200;
8c08894 update citation by unknown <nikosp41@gmail.com> 2022-03-08 11:20:05 +0200;
22048e9 update readme by unknown <nikosp41@gmail.com> 2022-02-21 12:37:49 +0200;
96f6911 update readme by unknown <nikosp41@gmail.com> 2022-02-21 12:34:37 +0200;
98619f2 update citation by unknown <nikosp41@gmail.com> 2022-02-21 12:31:57 +0200;
eac6385 version 0.99.13 by nikopech <nikosp41@gmail.com> 2022-02-04 10:14:41 +0200;
c109c20 Merge pull request <a href="#5">#5</a> from BiodataAnalysisGroup/dev by Nikolaos Pechlivanis <nikosp41@gmail.com> 2022-02-04 10:12:22 +0200;
d3357a9 Merge branch 'master' into dev by Nikolaos Pechlivanis <nikosp41@gmail.com> 2022-02-04 10:12:12 +0200;
3f42c4b version 0.99.12 by nikopech <nikosp41@gmail.com> 2022-02-04 10:09:07 +0200;
f0c0ebd change message api by unknown <nikosp41@gmail.com> 2022-02-02 10:51:23 +0200;
e4def35 Add conditions into test_get_lineage_report file by Aspasia Orfanou <aspasiaor@hotmail.com> 2022-02-01 17:30:15 +0200;
c76115f Check get lineage report function for unavailable API and create its testfile by Aspasia Orfanou <aspasiaor@hotmail.com> 2022-02-01 16:37:54 +0200;
6c60852 Rename list_gff3 to is_gff3 function and made it robust by Aspasia Orfanou <aspasiaor@hotmail.com> 2022-02-01 14:27:21 +0200;
0d7fb8e Update README.md by Nikolaos Pechlivanis <nikosp41@gmail.com> 2022-01-13 12:39:27 +0200;
9f94286 update description by nikopech <nikosp41@gmail.com> 2022-01-13 12:14:34 +0200;
9150683 remove paper src by nikopech <nikosp41@gmail.com> 2022-01-13 12:13:17 +0200;
6cd3284 update description by nikopech <nikosp41@gmail.com> 2022-01-13 11:32:24 +0200;
4edfcd1 article code by nikopech <nikosp41@gmail.com> 2022-01-12 17:02:59 +0200;
06de865 remove figures by nikopech <nikosp41@gmail.com> 2022-01-12 16:56:03 +0200;
89fbfc4 upgrade version by nikopech <nikosp41@gmail.com> 2022-01-12 15:44:15 +0200;
2b7c65f Delete .DS_Store by Nikolaos Pechlivanis <nikosp41@gmail.com> 2022-01-12 15:32:56 +0200;
ba35774 Merge pull request <a href="#4">#4</a> from BiodataAnalysisGroup/dev by Nikolaos Pechlivanis <nikosp41@gmail.com> 2022-01-12 15:32:33 +0200;
c46a412 pass check nikopech by nikopech <nikosp41@gmail.com> 2022-01-12 14:31:45 +0200;
52599d4 Changes in Unit tests and in rename input_checking functions by Aspasia Orfanou <aspasiaor@hotmail.com> 2022-01-11 14:54:59 +0200;
3f67625 fix multiple folder by nikopech <nikosp41@gmail.com> 2022-01-11 13:34:19 +0200;
2b4fafb fix input checks by nikopech <nikosp41@gmail.com> 2022-01-11 12:59:09 +0200;
02ea93c Changes in lineagespot and in isVcf functions by Aspasia Orfanou <aspasiaor@hotmail.com> 2022-01-11 12:11:12 +0200;
1bcf3fe Unit tests for lineagespot_hits and uniq variants by Aspasia Orfanou <aspasiaor@hotmail.com> 2022-01-10 20:18:10 +0200;
54e2caf Unit tests, updated DESCRIPTION and tested input parameters by Aspasia Orfanou <aspasiaor@hotmail.com> 2022-01-10 20:15:55 +0200;
eb1a355 Unit tests for lineagespot,merge_vcf,input functions by Aspasia Orfanou <aspasiaor@hotmail.com> 2022-01-06 20:55:06 +0200;
0e537cb Updated lineagespot.R with input checking functions by Aspasia Orfanou <aspasiaor@hotmail.com> 2022-01-05 15:47:35 +0200;
7eeb288 man and ref correction by nikopech <nikosp41@gmail.com> 2022-01-03 11:28:32 +0200;
b4a2bd1 corrected Rscripts after file.out deletion by Aspasia Orfanou <aspasiaor@hotmail.com> 2021-12-28 15:00:07 +0200;
ce25d6d Deleted file.out from R scripts by Aspasia Orfanou <aspasiaor@hotmail.com> 2021-12-28 11:46:45 +0200;
3487c9b read.me update by Stella <79847870+sfragkoul@users.noreply.github.com> 2021-12-28 10:24:44 +0200;
ec1eaf5 read.me by Stella <79847870+sfragkoul@users.noreply.github.com> 2021-12-28 10:20:58 +0200;
3749689 update 3rd line by Aspasia Orfanou <44154688+aspaor@users.noreply.github.com> 2021-12-28 10:19:37 +0200;
163ad03 remove base:: by nikopech <nikosp41@gmail.com> 2021-12-27 15:12:07 +0200;
39dbbb2 spaces, 80 characters by nikopech <nikosp41@gmail.com> 2021-12-27 15:08:23 +0200;
9d30eac n4spaces & >80 chars by Stella <79847870+sfragkoul@users.noreply.github.com> 2021-12-27 14:05:20 +0200;
f0bbe53 4 multiples & >80 chars by Stella <79847870+sfragkoul@users.noreply.github.com> 2021-12-27 13:07:10 +0200;
0b19e9a check and bioccheck complete, merged by nikopech <nikosp41@gmail.com> 2021-12-27 12:03:47 +0200;
947b257 Merge pull request <a href="#3">#3</a> from BiodataAnalysisGroup/Sofoklis by Nikolaos Pechlivanis <nikosp41@gmail.com> 2021-12-27 11:06:52 +0200;
83d7e3a Merge branch 'master' into Sofoklis by Nikolaos Pechlivanis <nikosp41@gmail.com> 2021-12-27 11:06:42 +0200;
92833bf Merge pull request <a href="#2">#2</a> from BiodataAnalysisGroup/Aspa by Nikolaos Pechlivanis <nikosp41@gmail.com> 2021-12-27 11:00:38 +0200;
cbbbc4a Merge pull request <a href="#1">#1</a> from BiodataAnalysisGroup/Stella by Nikolaos Pechlivanis <nikosp41@gmail.com> 2021-12-27 10:40:42 +0200;
48467af Merge branch 'master' into Stella by Nikolaos Pechlivanis <nikosp41@gmail.com> 2021-12-27 10:40:20 +0200;
9a6be44 check and bioccheck complete by nikopech <nikosp41@gmail.com> 2021-12-27 10:20:22 +0200;
0190668 Add files via upload by Styliani-Christina Fragkouli <79847870+sfragkoul@users.noreply.github.com> 2021-12-22 10:56:28 +0200;
0cc5ca5 Changed Rmd char limit to max by Aspasia Orfanou <aspasiaor@hotmail.com> 2021-12-21 10:42:55 +0200;
3b56fb4 Update lineagespot.Rmd by Aspasia Orfanou <44154688+aspaor@users.noreply.github.com> 2021-12-20 16:35:07 +0200;
7b97dcc Update uniq_variants.R by Sofoklis Keisaris <89997077+Sofokli5@users.noreply.github.com> 2021-12-20 15:15:48 +0200;
4383432 Update merge_vcf.R by Sofoklis Keisaris <89997077+Sofokli5@users.noreply.github.com> 2021-12-20 15:11:33 +0200;
27f9844 Update lineagespot_hits.R by Sofoklis Keisaris <89997077+Sofokli5@users.noreply.github.com> 2021-12-20 14:50:58 +0200;
913fba7 Update lineagespot.R by Sofoklis Keisaris <89997077+Sofokli5@users.noreply.github.com> 2021-12-20 14:42:02 +0200;
2b9b98d Update get_lineage_report.R by Sofoklis Keisaris <89997077+Sofokli5@users.noreply.github.com> 2021-12-20 14:34:49 +0200;
c52b100 Update lineagespot.Rmd by Sofoklis Keisaris <89997077+Sofokli5@users.noreply.github.com> 2021-12-20 14:27:43 +0200;
735867c Update uniq_variants.R by Sofoklis Keisaris <89997077+Sofokli5@users.noreply.github.com> 2021-12-20 14:23:51 +0200;
7bac9c9 Update merge_vcf.R by Sofoklis Keisaris <89997077+Sofokli5@users.noreply.github.com> 2021-12-20 14:21:30 +0200;
6d1d80d Update lineagespot.R by Sofoklis Keisaris <89997077+Sofokli5@users.noreply.github.com> 2021-12-20 14:04:46 +0200;
a6b2232 Update lineagespot_hits.R by Sofoklis Keisaris <89997077+Sofokli5@users.noreply.github.com> 2021-12-20 14:01:08 +0200;
6c077f1 test by Stella <79847870+sfragkoul@users.noreply.github.com> 2021-12-20 13:34:42 +0200;
9fcc003 add srep-article-code folder by unknown <nikosp41@gmail.com> 2021-11-15 13:30:14 +0200;
145b9c0 Create README.md by Nikolaos Pechlivanis <nikosp41@gmail.com> 2021-11-15 13:27:44 +0200;
4a42207 Update README.md by Nikolaos Pechlivanis <nikosp41@gmail.com> 2021-11-03 14:05:47 +0200;
7c093eb update readme by unknown <nikosp41@gmail.com> 2021-10-18 11:28:18 +0300;
89ca6a0 fix citation by unknown <nikosp41@gmail.com> 2021-10-12 11:20:57 +0300;
2a37a0b add date in DSCRIPTION file by unknown <nikosp41@gmail.com> 2021-10-11 12:40:52 +0300;
c3a6943 fix function overlaps by unknown <nikosp41@gmail.com> 2021-10-07 16:20:36 +0300;
e0cf184 add package functionalities by unknown <nikosp41@gmail.com> 2021-10-07 14:12:13 +0300;
2b87587 replace vcfR by unknown <nikosp41@gmail.com> 2021-09-29 12:08:54 +0300;
5a1db71 Merge branch 'dev' by iofeidis <jasonof75@gmail.com> 2021-09-28 16:26:24 +0300;
0f1cf7a Merge remote-tracking branch 'origin/master' into dev by iofeidis <jasonof75@gmail.com> 2021-09-28 11:07:41 +0300;
bfb9018 use VariantAnnotation package by unknown <nikosp41@gmail.com> 2021-09-28 10:58:59 +0300;
4877d58 GH Action by iofeidis <jasonof75@gmail.com> 2021-09-27 15:42:17 +0300;
effbdbc Merge remote-tracking branch 'origin/master' into dev by iofeidis <jasonof75@gmail.com> 2021-09-27 13:46:47 +0300;
5b4bdf3 add watched tags by unknown <nikosp41@gmail.com> 2021-09-24 11:22:47 +0300;
195adb9 change description by unknown <nikosp41@gmail.com> 2021-09-24 10:02:58 +0300;
3a154f7 Update DESCRIPTION by Nikolaos Pechlivanis <nikosp41@gmail.com> 2021-09-24 09:47:26 +0300;
431aa9d Update DESCRIPTION by Nikolaos Pechlivanis <nikosp41@gmail.com> 2021-09-23 16:31:05 +0300;
97c3aa0 Update DESCRIPTION by Nikolaos Pechlivanis <nikosp41@gmail.com> 2021-09-21 12:56:37 +0300;
89a0094 Update DESCRIPTION by Nikolaos Pechlivanis <nikosp41@gmail.com> 2021-09-21 12:53:18 +0300;
dd4e5dc Update DESCRIPTION by Nikolaos Pechlivanis <nikosp41@gmail.com> 2021-09-21 12:49:38 +0300;
aff049a update biocviews by unknown <nikosp41@gmail.com> 2021-09-21 12:48:13 +0300;
3852126 Final Pre-Review commit by iofeidis <jasonof75@gmail.com> 2021-09-21 11:54:43 +0300;