1. gCrisprTools
  2. Graph
Graph of gCrisprTools
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  • 1bb7f87 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:13:45 -0400;
  • bc6c181 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:13:45 -0400;
  • c0682ad bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:53:27 -0400;
  • 757cdf3 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:53:27 -0400;
  • 5d5f6da bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:52:32 -0400;
  • b31fbe6 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:52:32 -0400;
  • 868322a bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:49:24 -0400;
  • 0a41bea (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:49:24 -0400;
  • 881c664 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:14:23 -0400;
  • 154bc8e (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:14:23 -0400;
  • 0a76cba Remove betaScores test by Russell Bainer <rbainer@mazetx.com> 2022-10-21 10:00:34 -0700;
  • de5a01e Also add normalization fix by Russell Bainer <rbainer@mazetx.com> 2022-10-17 11:50:57 -0700;
  • 5e3b174 Update to omit RRA by Russell Bainer <rbainer@mazetx.com> 2022-10-17 11:49:38 -0700;
  • 1a65682 (origin/RELEASE_3_15, RELEASE_3_15) remove RRA completely by Russell Bainer <rbainer@mazetx.com> 2022-10-10 11:54:08 -0700;
  • b283965 Remove RRA dependency due to maintainer indolence by Russell Bainer <rbainer@mazetx.com> 2022-10-03 11:56:54 -0700;
  • 36752d4 Merge pull request <a href="#25">#25</a> from RussBainer/RELEASE_3_15 by Russell Bainer <50212033+RussBainer@users.noreply.github.com> 2022-09-28 16:59:54 -0700;
  • 800ddb8 Merge branch 'master' into RELEASE_3_15 by Russell Bainer <50212033+RussBainer@users.noreply.github.com> 2022-09-28 16:59:38 -0700;
  • 4de8008 update normalizeMedians by Russell Bainer <rbainer@mazetx.com> 2022-09-28 16:16:41 -0700;
  • ae6dfcb bug fix: omit deprecated as.df call in ct.seas() by Russell Bainer <rbainer@mazetx.com> 2022-05-16 09:25:02 -0700;
  • 9b6c981 remove as.df call in sparrow integration by Russell Bainer <rbainer@mazetx.com> 2022-05-16 09:23:54 -0700;
  • 2e49f6f update to bioc description state by Russell Bainer <rbainer@mazetx.com> 2022-04-26 11:53:07 -0700;
  • 26e5331 update ct.seas to suppress check for deprecated as.dfs argument by Russell Bainer <rbainer@mazetx.com> 2022-04-26 11:51:14 -0700;
  • b624cec bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:35:19 +0000;
  • c7958fa bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:35:19 +0000;
  • bbfacf8 remove as.dfs parameter from ct.seas by RussBainer <rbainer@gmail.com> 2022-04-20 10:08:41 -0700;
  • 8745d93 Merge pull request <a href="#23">#23</a> from RussBainer/fix-steves-problems by Russell Bainer <50212033+RussBainer@users.noreply.github.com> 2022-04-04 13:48:16 -0700;
  • bd6015e update internal `seas` call to use the new variable name by RussBainer <rbainer@gmail.com> 2022-04-04 13:46:10 -0700;
  • bfab1de clear out old docs by RussBainer <rbainer@gmail.com> 2022-03-24 15:08:25 -0700;
  • 411f7c7 reconcile version bump by RussBainer <rbainer@gmail.com> 2022-03-24 15:05:40 -0700;
  • ec96a0f Restoring to 2.0 version by RussBainer <rbainer@gmail.com> 2022-03-24 14:57:39 -0700;
  • efe750a Trying to omit sparrow functions as Steve gets his act together by RussBainer <rbainer@gmail.com> 2022-03-07 11:18:11 -0800;
  • ae16a49 update tests to omit sparrow dependencies by RussBainer <rbainer@gmail.com> 2022-03-03 10:25:53 -0800;
  • 8df81d2 Attempt pushing suppression logic into code chunk by RussBainer <rbainer@gmail.com> 2022-03-02 11:05:17 -0800;
  • 3052a07 bump by RussBainer <rbainer@gmail.com> 2022-02-24 12:19:29 -0800;
  • ca30c42 version bump to omit sparrow compilation in vignettes by RussBainer <rbainer@gmail.com> 2022-02-24 12:19:10 -0800;
  • de865c8 bump to push Bioc by RussBainer <rbainer@gmail.com> 2022-02-24 12:15:49 -0800;
  • 7189177 bump version by RussBainer <rbainer@gmail.com> 2022-02-24 08:46:56 -0800;
  • 04e666e Suppressing eval of seas functions in vignettes, which are currently failing. by RussBainer <rbainer@gmail.com> 2022-02-23 13:15:38 -0800;
  • d2c5e25 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:29:53 +0000;
  • 4783d8f (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:29:53 +0000;
  • fa5940d Merge pull request <a href="#22">#22</a> from RussBainer/modify-comparison-vignette by Russell Bainer <50212033+RussBainer@users.noreply.github.com> 2021-10-21 16:43:13 -0700;
  • 8b4302d Fix UpSet Naming convention by RussBainer <rbainer@gmail.com> 2021-10-21 16:39:55 -0700;
  • b2c4841 Comparison vignette updated by RussBainer <rbainer@gmail.com> 2021-10-19 14:15:49 -0700;
  • 68de006 bumping for Bioc view by RussBainer <rbainer@gmail.com> 2021-10-01 16:46:47 -0700;
  • 9716251 Passing BiocCheck by RussBainer <rbainer@gmail.com> 2021-10-01 16:27:10 -0700;
  • ea6d9bd eliminate all paste in messages by RussBainer <rbainer@gmail.com> 2021-10-01 15:57:34 -0700;
  • 6a99137 Pass Check by RussBainer <rbainer@gmail.com> 2021-10-01 15:21:08 -0700;
  • 82829f4 improve key checking functionality. by RussBainer <rbainer@gmail.com> 2021-09-30 21:34:14 -0700;
  • 0db1250 Create ct.keyCheck, deprecate ct.inputCheck by RussBainer <rbainer@gmail.com> 2021-09-30 21:25:04 -0700;
  • 4bfbd4c Improve sample key checking and gracefully handle improper plot-it calls. by RussBainer <rbainer@gmail.com> 2021-09-30 18:44:00 -0700;
  • 0ff7c91 Fix sampleKey Handling on grnaRBR by RussBainer <rbainer@gmail.com> 2021-09-30 18:31:50 -0700;
  • de4a6c8 Merge pull request <a href="#20">#20</a> from RussBainer/fixsplines by Russell Bainer <50212033+RussBainer@users.noreply.github.com> 2021-09-20 17:02:30 -0700;
  • 46553bd Update spline fitting documentation by RussBainer <rbainer@gmail.com> 2021-09-20 17:01:48 -0700;
  • 7437c8f apparently the numbering needs to be 1.99 to bump properly by RussBainer <rbainer@gmail.com> 2021-08-23 09:20:46 -0700;
  • 77afae1 Update date in DESCRIPTION by RussBainer <rbainer@gmail.com> 2021-08-23 09:18:24 -0700;
  • 9d52a1f Merge pull request <a href="#18">#18</a> from RussBainer/upset by Russell Bainer <50212033+RussBainer@users.noreply.github.com> 2021-08-23 09:05:58 -0700;
  • bfdf2b2 remove export of gather sparrow by RussBainer <rbainer@gmail.com> 2021-08-23 09:03:13 -0700;
  • 100fb83 change offset of quadrant annotation on ct.scatter() by RussBainer <rbainer@gmail.com> 2021-08-04 17:27:21 -0700;
  • 8032b82 minor cosmetic changes and fix man pages by RussBainer <rbainer@gmail.com> 2021-08-04 14:35:07 -0700;
  • 4edcf0a Fixed Example Workflow by RussBainer <rbainer@gmail.com> 2021-07-07 12:16:21 -0700;
  • d1d462a Fix softlog NULL output by RussBainer <rbainer@gmail.com> 2021-06-07 16:35:32 -0700;
  • f53c68d rename gatherSparrow by RussBainer <rbainer@gmail.com> 2021-06-04 14:12:45 -0700;
  • cd9c6f5 Update ct.seas and subordinate functions to accept a hard specification of significant targets by RussBainer <rbainer@gmail.com> 2021-06-02 11:03:27 -0700;
  • 5b2e436 update softlog to never return values below zero; change docs for scatter to clarify axis values by RussBainer <rbainer@gmail.com> 2021-05-28 09:17:56 -0700;
  • 08dda07 Ran formatR by RussBainer <rbainer@gmail.com> 2021-05-24 21:12:08 -0700;
  • b4441bf change lapply, seq_along by RussBainer <rbainer@gmail.com> 2021-05-24 18:47:45 -0700;
  • a72b4f8 remove (most) sapply according to Bioc Guidelines by RussBainer <rbainer@gmail.com> 2021-05-24 16:40:28 -0700;
  • 40bf857 update reports by RussBainer <rbainer@gmail.com> 2021-05-24 15:35:49 -0700;
  • 4c53452 Updated reports to allow NULL alignment matrix arguments by RussBainer <rbainer@gmail.com> 2021-05-24 14:56:23 -0700;
  • 45994a0 Add hard call to Biobase for report skeletons by RussBainer <rbainer@gmail.com> 2021-05-24 13:42:07 -0700;
  • cfde5c9 Add .Rbuildignore and examples to some of the minor functions. by RussBainer <rbainer@gmail.com> 2021-05-24 13:28:55 -0700;
  • b63f64c remove old objects and update description by RussBainer <rbainer@gmail.com> 2021-05-20 11:42:08 -0700;
  • 64bb5f5 Passing Check by RussBainer <rbainer@gmail.com> 2021-05-20 11:26:59 -0700;
  • 4307d0b adding markdown to DESCRIPTION and minor updates o vignettes by RussBainer <rbainer@gmail.com> 2021-05-19 21:07:43 -0700;
  • 49907a1 Added all of steve's suggestions by RussBainer <rbainer@gmail.com> 2021-05-19 18:01:32 -0700;
  • 08ac712 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:22:51 +0000;
  • ea57239 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:22:51 +0000;
  • 6f248c6 move to vignette troubleshooting by RussBainer <rbainer@gmail.com> 2021-05-18 16:41:01 -0700;
  • 6560b7b roxygenized by RussBainer <rbainer@gmail.com> 2021-05-18 15:56:01 -0700;
  • 6315746 vignette bugfix/improved target detection in PRC/ROC by RussBainer <rbainer@gmail.com> 2021-05-18 15:55:06 -0700;
  • 4cbe4a5 Interim update so Steve can see the "current" implementatin of the compileSparrow function by RussBainer <rbainer@gmail.com> 2021-05-18 15:42:25 -0700;
  • 7f7f035 update NEWS by RussBainer <rbainer@gmail.com> 2021-05-18 14:20:22 -0700;
  • 75b250f roxygenize by RussBainer <rbainer@gmail.com> 2021-05-18 14:12:03 -0700;
  • e6f5559 checking prior to R CMD CHECK testing by RussBainer <rbainer@gmail.com> 2021-05-18 14:11:01 -0700;
  • bf1f31c rough draft of release complete. Shipping to Steve. by RussBainer <rbainer@gmail.com> 2021-05-13 20:46:05 -0700;
  • 298b6e9 pause for Rstudio refresh by RussBainer <rbainer@gmail.com> 2021-05-13 17:11:02 -0700;
  • 6b1f55a reroxygenize by RussBainer <rbainer@gmail.com> 2021-05-13 16:01:26 -0700;
  • 435a16b add export tag to ct.seas by RussBainer <rbainer@gmail.com> 2021-05-13 15:45:48 -0700;
  • 5794f47 Rename annotation file by RussBainer <rbainer@gmail.com> 2021-05-13 15:42:40 -0700;
  • 8475445 Removing panther functions, which were failing on build by RussBainer <rbainer@gmail.com> 2021-05-13 15:40:17 -0700;
  • 94d599b widespread roxygenation in prep for vignette creation by RussBainer <rbainer@gmail.com> 2021-05-13 14:45:24 -0700;
  • ecf7adc Improve passthrough functionality for simpleResult by RussBainer <rbainer@gmail.com> 2021-05-12 17:44:49 -0700;
  • a219f31 update simpleResult to handle different input formats more elegantly and prioritize strong signals by RussBainer <rbainer@gmail.com> 2021-05-12 10:04:16 -0700;
  • 28a68ca Update ct.upSet to take extra args by RussBainer <rbainer@gmail.com> 2021-05-06 13:43:48 -0700;
  • 717bcd4 fix combo matrix ordering by RussBainer <rbainer@gmail.com> 2021-05-05 18:35:07 -0700;
  • 2a498ba version update before tackling sparrow integration by RussBainer <rbainer@gmail.com> 2021-05-05 17:11:40 -0700;
  • 7424029 deprecate ct.PantherPathwayEnrich by RussBainer <rbainer@gmail.com> 2021-05-05 17:06:41 -0700;
  • fbbcfa7 ROC Complete and PRC updated by RussBainer <rbainer@gmail.com> 2021-05-05 17:00:51 -0700;
  • e6b7caa Update generatePRC and associated enrichment testing functions. by RussBainer <rbainer@gmail.com> 2021-05-05 16:08:21 -0700;
  • f547ccd ctPRC core code update by RussBainer <rbainer@gmail.com> 2021-05-05 15:41:29 -0700;