Name Mode Size
.github 040000
R 040000
data 040000
man 040000
pkgdown 040000
tests 040000
vignettes 040000
.Rbuildignore 100644 0 kb
.gitignore 100644 1 kb
DESCRIPTION 100644 2 kb
NAMESPACE 100644 1 kb
NEWS 100644 2 kb 100644 4 kb
_pkgdown.yml 100644 0 kb
<!-- badges: start --> [![R-CMD-check-bioc](]( [![codecov](]( [![License: Artistic-2.0](]( <!-- badges: end --> The **enrichViewNet** package enables the transformation of functional enrichment results, formatted as the results obtained by [gprofiler2](, into networks. First, the **enrichViewNet** package enables the visualization of enrichment results a [Cytoscape]( network where significant terms (Gene Ontology/Reactome/Transcription Factor/etc..) and genes are nodes. In this network, edges connect genes that are part of the enrichment request to their terms. In addition, the **enrichViewNet** package also provides the option to create enrichment maps from functional enrichment results. Enrichment maps, as introduced in the Bioconductor [enrichplot]( package, enable the visualization of enriched terms into a network with edges connecting overlapping genes. Thus, enriched terms with overlapping genes cluster together. ## Bioconductor Package ## [![Bioconductor Time](]( The **enrichViewNet** package is now an official package of [Bioconductor]( The current Bioconductor release can be directly downloaded from their website: [Current release]( ## Authors ## [Astrid Desch&ecirc;nes]( "Astrid Desch&ecirc;nes"), [Pascal Belleau]( "Pascal Belleau"), [Robert L Faure](, [Maria J Fernandes](, [Alexander Krasnitz]( and [David A Tuveson]( ## License ## This package and the underlying **enrichViewNet** code are distributed under the Artistic license 2.0. You are free to use and redistribute this software. For more information on Artistic 2.0 License see []( ## Documentation ## [enrichViewNet Website]( [enrichViewNet Get Started]( ## Installation ## To install the latest version accessible, the [devtools]( package is required. ## Load required package library(devtools) ## Install the latest version of enrichViewNet devtools::install_github('adeschen/enrichViewNet') To install this package from [Bioconductor](, start R (version 4.3 or later) and enter: if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("enrichViewNet") ## Bugs/Feature requests ## If you have any bugs or feature requests, [let us know]( Thanks!