Bioconductor Code: eiR

Graph of eiR

5af151f (HEAD -> devel, origin/devel, origin/HEAD) make work with -DR_NO_REMAP by khoran <khoran@cs.ucr.edu> 2025-02-11 07:36:11 -0800;
e9e5231 (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:45:22 -0400;
2983267 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:45:22 -0400;
09203f6 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:31:10 -0400;
f29df21 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:31:10 -0400;
78c82dd bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:53:29 -0400;
b7149c1 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:53:29 -0400;
546b906 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:26:32 -0400;
cfdb248 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:26:32 -0400;
6cf7dde added RSQLite to suggests by khoran <khoran@cs.ucr.edu> 2023-04-14 07:57:31 -0700;
a57ea92 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:08:03 -0400;
96ba2db (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:08:03 -0400;
478099a bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:14:10 +0000;
2e56da4 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:14:10 +0000;
85518ac Starting with BioC 3.15 + R 4.2, 32-bit Windows is no longer supported so Windows builds are single arch only (i.e. 64-bit only) by Hervé Pagès <hpages.on.github@gmail.com> 2021-12-16 13:17:29 -0800;
06f9be7 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:07:27 +0000;
2f67dc0 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:07:27 +0000;
7c51f83 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:58:17 +0000;
b291e60 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:58:17 +0000;
339a450 fixed rmarkdown error by khoran <khoran@cs.ucr.edu> 2021-04-19 11:20:44 -0700;
554a650 update vignette layout by khoran <khoran@cs.ucr.edu> 2021-01-25 11:46:09 -0800;
ec4a190 Merge remote-tracking branch 'upstream/master' by khoran <khoran@cs.ucr.edu> 2021-01-25 10:46:21 -0800;
0193cc9 remove dependancy on gespeR package by khoran <khoran@cs.ucr.edu> 2021-01-25 10:45:06 -0800;
8e3a896 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:50:00 -0400;
ac54c4a (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:50:00 -0400;
e1ea5b5 make examples independent of ChemmineOB by khoran <khoran@cs.ucr.edu> 2020-10-14 11:49:15 -0700;
43a3c87 Merge remote-tracking branch 'upstream/master' by khoran <khoran@cs.ucr.edu> 2020-07-27 14:53:10 -0700;
e47d0fb add parameter to allow skipping priority calculation in eiInit. also fixed some spelling mistakes in man page by khoran <khoran@cs.ucr.edu> 2020-07-27 14:52:04 -0700;
2e3aa85 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:33:55 +0000;
7445438 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:33:55 +0000;
c9064f1 disable debug in unit tests by khoran <khoran@cs.ucr.edu> 2020-03-30 12:03:45 -0700;
1c6a069 Fixed unit test bug. ConnSource would not use correct directory if it was different than 'test_dir'. by khoran <khoran@cs.ucr.edu> 2020-03-30 18:51:13 +0000;
710cc2a allow setting priority function as an option to eiInit by khoran <khoran@cs.ucr.edu> 2020-03-25 15:53:57 -0700;
0d1b5c5 Merge remote-tracking branch 'upstream/master' by khoran <khoran@cs.ucr.edu> 2020-03-25 11:20:51 -0700;
6fb07fc fixed bug with empty result sets. originally fixed and deployed on Oct 23, 2019 by khoran <khoran@cs.ucr.edu> 2020-03-25 11:18:39 -0700;
d718aa0 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:36:46 -0400;
104b70f (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:38 -0400;
5532fc4 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:21 -0400;
cbdea3e (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:42 -0400;
6d8dd1c bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:31 -0400;
f11bf8f (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:51 -0400;
831d077 added biocview Metabolomics by khoran <khoran@cs.ucr.edu> 2018-10-22 13:35:26 -0700;
830144d bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:39 -0400;
598db5a (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:29 -0400;
11b8cf5 tweaked vinnette a bit by khoran <khoran@cs.ucr.edu> 2018-04-23 08:22:51 -0700;
3a76fd6 mark unsupported on win32 by khoran <khoran@cs.ucr.edu> 2018-02-21 09:29:03 -0800;
877b45a potential fix for windows version by khoran <khoran@cs.ucr.edu> 2018-02-12 14:54:57 -0800;
367d844 fixed bug caused by using gzfile on non-gzipped files. Only affected R 3.5.x by khoran <khoran@cs.ucr.edu> 2018-01-16 16:52:33 -0800;
2ab2b31 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:46 -0400;
8b65d7f (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:40:01 -0400;
17a9d90 version 1.17.5 by khoran <khoran@cs.ucr.edu> 2017-10-18 13:28:29 -0700;
1a8e4b6 cannot reproduce remote build error on windows, so disabling windows again for now by khoran <khoran@cs.ucr.edu> 2017-10-18 09:28:56 -0700;
402e9e3 fixed bug on windows by khoran <khoran@cs.ucr.edu> 2017-10-03 13:44:09 -0700;
ba3cda7 require RcppAnnoy >= 0.0.9, so should now work on windows by khoran <khoran@cs.ucr.edu> 2017-09-22 14:03:48 -0700;
4583658 fixed failing unit test by khoran <khoran@cs.ucr.edu> 2017-09-07 10:35:09 -0700;
9730931 (origin/RELEASE_3_5, RELEASE_3_5) fixed failing unit test by khoran <khoran@cs.ucr.edu> 2017-09-07 10:16:53 -0700;
857c754 fix for RSQLite 2 by Kevin Horan <khoran@cs.ucr.edu> 2017-06-30 21:39:29 +0000;
ef423cd Merge branch 'master' into devel by Kevin Horan <khoran@cs.ucr.edu> 2017-06-30 20:19:46 +0000;
293c0f9 disable debug by Kevin Horan <khoran@cs.ucr.edu> 2017-06-30 20:19:40 +0000;
18a0000 bug fix, added embedding check function by Kevin Horan <khoran@cs.ucr.edu> 2017-06-30 20:19:34 +0000;
00c6c91 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
cafadfe Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
076a0c9 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
ff673f3 mark the package as unsupoorted on Windows on per Kevin Horan's request by Herve Pages <hpages@fhcrc.org> 2017-04-12 20:38:20 +0000;
056a7b2 reinstate building on Windows by Valerie Obenchain <vobencha@fhcrc.org> 2017-03-14 22:22:41 +0000;
8cc10ec cleanup by Kevin Horan <khoran@cs.ucr.edu> 2017-03-11 19:23:03 +0000;
ef8b9b1 removed some bad src files by Kevin Horan <khoran@cs.ucr.edu> 2017-03-11 18:58:50 +0000;
5eaca21 updated news file by Kevin Horan <khoran@cs.ucr.edu> 2017-03-04 00:29:45 +0000;
a54dba5 fixed DESCRIPTION by Kevin Horan <khoran@cs.ucr.edu> 2017-03-04 00:21:42 +0000;
2ee8696 disable debug by Kevin Horan <khoran@cs.ucr.edu> 2017-03-04 00:15:48 +0000;
cb1e51c bug fix, added embedding check function by Kevin Horan <khoran@cs.ucr.edu> 2017-03-04 00:15:35 +0000;
ef46365 fixed date by Kevin Horan <khoran@cs.ucr.edu> 2017-01-23 23:22:37 +0000;
2cb500f fixed issue with RSQLite by Kevin Horan <khoran@cs.ucr.edu> 2017-01-23 23:20:41 +0000;
d2011e4 disable debug by Kevin Horan <khoran@cs.ucr.edu> 2017-01-23 23:20:34 +0000;
0b04af4 bug fix, added embedding check function by Kevin Horan <khoran@cs.ucr.edu> 2017-01-23 23:20:27 +0000;
b8fd767 (origin/RELEASE_3_4, RELEASE_3_4) make code work with RSQLite 1.1 by Kevin Horan <khoran@cs.ucr.edu> 2016-11-30 19:52:12 +0000;
7e85715 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
fb88c2d Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
8f09d4a bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
88d0090 rolled back to version wokring with RSQLite 1.0.0 by Kevin Horan <khoran@cs.ucr.edu> 2016-10-15 17:16:01 +0000;
abec447 make things work with RSQLite 1.1 by Kevin Horan <khoran@cs.ucr.edu> 2016-10-12 22:04:13 +0000;
690f7b2 fixed merge bug by Kevin Horan <khoran@cs.ucr.edu> 2016-10-12 17:21:00 +0000;
dde7514 change README to be INSTALL since it is about installation issues by Kevin Horan <khoran@cs.ucr.edu> 2016-10-12 16:51:37 +0000;
5feca62 added db indexes to speed up updates by Kevin Horan <khoran@cs.ucr.edu> 2016-10-12 16:51:32 +0000;
2df110d disable debug by Kevin Horan <khoran@cs.ucr.edu> 2016-10-12 16:51:27 +0000;
396513c bug fix, added embedding check function by Kevin Horan <khoran@cs.ucr.edu> 2016-10-12 16:51:21 +0000;
13700a1 fix for finding un-embedded descriptor quickly by Kevin Horan <khoran@cs.ucr.edu> 2016-10-12 16:51:15 +0000;
00bed60 (origin/RELEASE_3_3, RELEASE_3_3) Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:18:19 +0000;
dbc3ff7 Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:14:22 +0000;
3280ea3 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:15:25 +0000;
03b9638 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:05:31 +0000;
a897a36 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
4ba3512 Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
d0129d5 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
f77bd7e Bump version to force propagation after removing gsl dylibs on morelia (packages will now include static gsl lib). by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-02-21 17:40:33 +0000;
1c51d4f (origin/RELEASE_3_2, RELEASE_3_2) some edits by Thomas Girke <thomas.girke@ucr.edu> 2016-01-04 15:38:40 +0000;
8c43ae1 Commit made by the Bioconductor Git-SVN bridge. by Kevin Horan <khoran@cs.ucr.edu> 2016-01-04 15:38:03 +0000;
5059db8 Commit made by the Bioconductor Git-SVN bridge. by Kevin Horan <khoran@cs.ucr.edu> 2016-01-04 15:14:16 +0000;
1f7342b ported vignette to R Markdown by Thomas Girke <thomas.girke@ucr.edu> 2016-01-04 15:11:50 +0000;
543ce96 ported vignette to R Markdown by Thomas Girke <thomas.girke@ucr.edu> 2016-01-04 14:56:58 +0000;