1. dcanr
  2. Graph
Graph of dcanr
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  • 1a99f0d (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:36:54 -0400;
  • 7971c29 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:36:54 -0400;
  • d9e562e bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:14:23 -0400;
  • 46cf53e (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:14:23 -0400;
  • 0d98989 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:13:22 -0400;
  • 01a78db (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:13:22 -0400;
  • 8839e1a bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:09:53 -0400;
  • 7d0b3cc (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:09:53 -0400;
  • fc33835 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:19:47 -0400;
  • ffdded1 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:19:47 -0400;
  • 95be116 Fix citation by bhuva.d <bhuva.d@wehi.edu.au> 2022-10-11 16:09:37 +1100;
  • 4a98c14 Updated citation by bhuva.d <bhuva.d@wehi.edu.au> 2022-10-11 15:18:55 +1100;
  • 9196ead Remove redundant files by bhuva.d <bhuva.d@wehi.edu.au> 2022-10-11 14:23:05 +1100;
  • 7039992 Fix GHA by bhuva.d <bhuva.d@wehi.edu.au> 2022-10-11 12:01:36 +1100;
  • 612f453 Remove previous template by bhuva.d <bhuva.d@wehi.edu.au> 2022-10-11 12:01:07 +1100;
  • 85fc020 Bug fixes (namespace, GHA) by bhuva.d <bhuva.d@wehi.edu.au> 2022-10-11 10:55:49 +1100;
  • ea49141 Added method to provide a more flexible interface to the z-score method by bhuva.d <bhuva.d@wehi.edu.au> 2022-10-10 21:29:18 +1100;
  • 1e95fb8 Updated namespace by bhuva.d <bhuva.d@wehi.edu.au> 2022-10-10 21:15:21 +1100;
  • 3c4f594 Remove COSINE package and the associated ECF method by bhuva.d <bhuva.d@wehi.edu.au> 2022-10-10 21:09:28 +1100;
  • 4f82d79 Version bump to latest version by bhuva.d <bhuva.d@wehi.edu.au> 2022-10-10 16:40:13 +1100;
  • 8b5b4a9 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:55:20 +0000;
  • 1f025f1 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:55:20 +0000;
  • 496df92 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:51:27 +0000;
  • 57551c6 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:51:27 +0000;
  • d223939 Updated documentation and added dcZscore, a more flexible function to apply the z-score algorithm. by bhuva.d <bhuva.d@wehi.edu.au> 2021-05-27 15:47:29 +1000;
  • e3fdc02 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:43:17 +0000;
  • ca50fbf (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:43:17 +0000;
  • 00e5776 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:45:37 -0400;
  • 39a8446 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:45:37 -0400;
  • eedcea0 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:26:20 +0000;
  • 9c3a9e7 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:26:20 +0000;
  • 5896294 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:43:34 -0400;
  • 53e0500 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:11:39 -0400;
  • 22ebfbb updated package site by bhuvad <bhuva.d@wehi.edu.au> 2019-08-06 13:28:54 +1000;
  • c55e1b0 Fixed NAMESPACE issue introduced by adding the LDGM implementation by bhuvad <bhuva.d@wehi.edu.au> 2019-08-06 13:00:55 +1000;
  • 7d29c5b Full integration of LDGM to the evaluation framework. Precomputed results for LDGM. Allowed passing of condition-specific inference parameters which are required for LDGM and could be used by other methods. by bhuvad <bhuva.d@wehi.edu.au> 2019-08-06 12:47:37 +1000;
  • b65e528 LDGM - latent differential graphical models (Tian et al. 2016 NAR) implementation added to dcanr by bhuvad <bhuva.d@wehi.edu.au> 2019-08-02 15:19:24 +1000;
  • 2937b56 allow partial matching of arguments to dcScore and dcPipeline by bhuvad <bhuva.d@wehi.edu.au> 2019-08-02 14:44:50 +1000;
  • 768f0ec fixed bug with dcPipeline where custom pipelines generated binary matrices by bhuvad <bhuva.d@wehi.edu.au> 2019-07-18 15:29:48 +1000;
  • 883cab8 Fixed bug in parallelisation of permutation tests by bhuvad <bhuva.d@wehi.edu.au> 2019-07-16 10:42:31 +1000;
  • 7a9eb23 Fixed bug with permutation tests by bhuvad <bhuva.d@wehi.edu.au> 2019-07-16 10:26:48 +1000;
  • 8494e35 updated package site by bhuvad <bhuva.d@wehi.edu.au> 2019-05-03 09:42:51 +1000;
  • 58ec76b bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:16:29 -0400;
  • 0adcc26 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:15 -0400;
  • 198aa79 Added a link to the full simulated dataset by bhuvad <bhuva.d@wehi.edu.au> 2019-04-29 09:18:15 +1000;
  • 3695e6a site update and version bump for changes made to address initial BioC review by bhuvad <bhuva.d@wehi.edu.au> 2019-04-18 13:42:29 +1000;
  • 93c2fec Made changes to installation instructions in the vignette by bhuvad <bhuva.d@wehi.edu.au> 2019-04-18 10:40:33 +1000;
  • b38dc5b dcNetwork example plots the resulting network by bhuvad <bhuva.d@wehi.edu.au> 2019-04-18 10:34:45 +1000;
  • 3f0a20a used match.args to evaluate function inputs where there is a discrete number of choices by bhuvad <bhuva.d@wehi.edu.au> 2019-04-18 10:25:52 +1000;
  • 90a4fe8 News file format modified by bhuvad <bhuva.d@wehi.edu.au> 2019-04-18 10:11:00 +1000;
  • 3f5b3f6 LazyData set to false by bhuvad <bhuva.d@wehi.edu.au> 2019-04-18 10:10:42 +1000;
  • b414a9a Permutation tests reproducibility enabled using doRNG instead of set.seed in loop by bhuvad <bhuva.d@wehi.edu.au> 2019-04-02 12:25:38 +1100;
  • 672d122 removed ecf and ggm-based from test cases as they also use permutation tests by bhuvad <bhuva.d@wehi.edu.au> 2019-03-27 14:33:28 +1100;
  • 5ccdc55 made tests light-weight by bhuvad <bhuva.d@wehi.edu.au> 2019-03-27 14:19:06 +1100;
  • 217c759 changed author name by bhuvad <bhuva.d@wehi.edu.au> 2019-03-27 11:12:38 +1100;
  • aff642f Merge branch 'fix_test_issues' by bhuvad <bhuva.d@wehi.edu.au> 2019-03-27 11:09:21 +1100;
  • a8836bc resolved merge conflicts by selecting new changes by bhuvad <bhuva.d@wehi.edu.au> 2019-03-27 11:08:01 +1100;
  • d31c176 Fixed test cases - removed dicer and other methods that use permutation tests from unit tests. They use foreach which is creating issues with the R CMD check. by bhuvad <bhuva.d@wehi.edu.au> 2019-03-27 10:36:32 +1100;
  • 0a50586 disabled tests so that CMD check does not time out by bhuvad <bhuva.d@wehi.edu.au> 2019-03-26 15:08:37 +1100;
  • 96e08a5 removed set.seed call in perm.test. removed some test cases by bhuvad <bhuva.d@wehi.edu.au> 2019-03-26 14:37:45 +1100;
  • 3805ffa removed dicer from checks. for some reason, the foreach loop used in the permutation test results in an object that is not a matrix when performing a R CMD check (len 6). This is not the case when running devtools::test by bhuvad <bhuva.d@wehi.edu.au> 2019-03-26 13:57:13 +1100;
  • 93a3ae1 removed library calls from test cases by bhuvad <bhuva.d@wehi.edu.au> 2019-03-26 10:54:40 +1100;
  • 048ac47 fixed test cases. changed example from ecf to mindy so that it can work without packages in suggests by bhuvad <bhuva.d@wehi.edu.au> 2019-03-25 21:33:06 +1100;
  • 8340512 version bump by bhuvad <bhuva.d@wehi.edu.au> 2019-03-25 20:53:43 +1100;
  • 98003e2 fixed typos in test code by bhuvad <bhuva.d@wehi.edu.au> 2019-03-25 20:52:39 +1100;
  • 7c52237 testing bug fix. Fixed issues with multtest and statistical_tests tests by bhuvad <bhuva.d@wehi.edu.au> 2019-03-25 16:28:39 +1100;
  • 5a4d322 self-contained tests for evaluations by bhuvad <bhuva.d@wehi.edu.au> 2019-03-25 16:13:07 +1100;
  • 73d73c6 further bug fixes with tests. (test_inference_methods) by bhuvad <bhuva.d@wehi.edu.au> 2019-03-25 15:19:39 +1100;
  • 542465a further bug fixes with tests related to EBcoexpress and ECF by bhuvad <bhuva.d@wehi.edu.au> 2019-03-25 15:02:08 +1100;
  • fede380 test cases for EBcoexpress and ECF skipped if packages are absent. (fixed bug) by bhuvad <bhuva.d@wehi.edu.au> 2019-03-25 14:39:40 +1100;
  • 4d98069 updated github readme by bhuvad <bhuva.d@wehi.edu.au> 2019-03-25 13:05:59 +1100;
  • cbf457c updated pkg site by bhuvad <bhuva.d@wehi.edu.au> 2019-03-25 13:02:51 +1100;
  • 2bcd02f Submission date updated. dcMethod function dc.method arg specified in vignettes. plot aces labelled in vignette 2 by bhuvad <bhuva.d@wehi.edu.au> 2019-03-25 13:00:20 +1100;
  • 2e0e71e updated package description by bhuvad <bhuva.d@wehi.edu.au> 2019-03-13 15:08:54 +1100;
  • e456ec4 updated readme file by bhuvad <bhuva.d@wehi.edu.au> 2019-03-13 15:03:34 +1100;
  • 9811a84 fixed typos and grammar in vignettes. updated website by bhuvad <bhuva.d@wehi.edu.au> 2019-03-13 15:00:14 +1100;
  • dd036f9 updated news file to new format by bhuvad <bhuva.d@wehi.edu.au> 2018-10-10 12:21:57 +1100;
  • 21955a7 address notes from BiocCheck by bhuvad <bhuva.d@wehi.edu.au> 2018-10-10 11:32:25 +1100;
  • ec2be88 modified theme in website and customised default settings by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 16:39:16 +1100;
  • d41bde2 update website by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 15:25:18 +1100;
  • fcc6f47 update site - add news by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 15:19:13 +1100;
  • e47cc27 relocate news.md for website access by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 15:17:55 +1100;
  • 3c49625 create website for package using pkgdown by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 15:10:46 +1100;
  • ce00391 plot title by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 14:49:36 +1100;
  • cd443d8 Added plot title in readme example by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 14:48:35 +1100;
  • 31f2853 generate md from Rmd by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 14:46:39 +1100;
  • c0a483b use a Rmd readme instead of a md by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 14:45:10 +1100;
  • 27e8f9f update URLs to point to the new repo location by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 14:43:48 +1100;
  • bfbf775 move NEWS.md to inst by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 14:34:55 +1100;
  • 6224c5a modified installation instructions by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 14:33:36 +1100;
  • 76ba335 updated readme by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 14:29:09 +1100;
  • 5e36995 add custom citation and references if required by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 13:39:50 +1100;
  • 4f88c9a More documentation on proper citation of methods paper by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 13:38:42 +1100;
  • 89ba656 remove excessive spacing by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 12:59:08 +1100;
  • ce19315 documentation updated to inform about the packages used. Removed ebcoexpress.seed so that seed is specified by the user only by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 12:58:41 +1100;
  • a42403f remove devtools setup script by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 12:49:45 +1100;
  • 956e1e9 suggests edgeR for DGEList though no function from edgeR is required by bhuvad <bhuva.d@wehi.edu.au> 2018-10-09 12:26:16 +1100;
  • 398f8d3 typos in sim102 documentation by bhuvad <bhuva.d@wehi.edu.au> 2018-10-08 22:54:35 +1100;
  • 9045a7a added support for evaluating methods that use continuous conditions by bhuvad <bhuva.d@wehi.edu.au> 2018-10-08 22:41:20 +1100;
  • b548ad7 added documentation for package and data by bhuvad <bhuva.d@wehi.edu.au> 2018-10-08 22:30:01 +1100;