Name Mode Size
R 040000
inst 040000
man 040000
vignettes 040000
.Rbuildignore 100644 0 kb
.gitignore 100644 1 kb
DESCRIPTION 100644 1 kb
NAMESPACE 100644 1 kb 100644 1 kb 100644 1 kb
# customCMPdb: Integrating Community and Custom Compound Collections ## Introduction This package serves as a query interface for important community collections of small molecules, while also allowing users to include custom compound collections. At the time of writing, the following community databases are included: + [DrugAge]( + [DrugBank]( + [CMAP02]( + [LINCS]( ## Installation and Loading `customCMPdb` is an R/Bioconductor package and can be installed using `BiocManager::install()`. ```r if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("customCMPdb") ``` To obtain the most recent updates immediately, one can install it directly from GitHub as follows. ```r devtools::install_github("yduan004/customCMPdb", build_vignettes=TRUE) ``` After the package is installed, it can be loaded into an R session as follows. ```r library(customCMPdb) ``` For detailed description of the package, please refer to the vignette by running ```r browseVignettes("customCMPdb") ``` ## Vignette The vignette of this package is also available at [here](