- cogeqc
- Graph
-
8c60dba
(HEAD -> devel, origin/master, origin/devel, origin/HEAD)
bump x.y.z version to odd y following creation of RELEASE_3_20 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2024-10-29 11:11:13 -0400;
-
8ce711f
(origin/RELEASE_3_20, RELEASE_3_20)
bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2024-10-29 11:11:13 -0400;
-
88dde65
bump x.y.z version to odd y following creation of RELEASE_3_19 branch by
J Wokaty <jwokaty@users.noreply.github.com>
2024-04-30 11:42:19 -0400;
-
35e881e
(origin/RELEASE_3_19, RELEASE_3_19)
bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by
J Wokaty <jwokaty@users.noreply.github.com>
2024-04-30 11:42:18 -0400;
-
173a2b4
(origin/RELEASE_3_18, RELEASE_3_18)
Version bump in release by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2024-01-12 22:39:10 +0100;
-
dfd5166
Updated GHA workflow and simplified pkgdown configs by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2024-01-12 22:37:55 +0100;
-
bf8eb30
Version bump in devel by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2024-01-12 22:38:21 +0100;
-
d9608e3
Updated GHA workflow and simplified pkgdown configs by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2024-01-12 22:37:55 +0100;
-
094b642
Version bump in release by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2024-01-12 16:22:12 +0100;
-
44e9ef2
Fixed unit test and added CITATION file by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2024-01-12 16:19:48 +0100;
-
67fab65
Version bump in devel by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2024-01-12 16:20:25 +0100;
-
54569f7
Fixed unit test and added CITATION file by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2024-01-12 16:19:48 +0100;
-
693339b
bump x.y.z version to odd y following creation of RELEASE_3_18 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2023-10-24 11:41:44 -0400;
-
-
c152c0a
bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2023-10-24 11:41:44 -0400;
-
23da58a
(origin/RELEASE_3_17, RELEASE_3_17)
Version bump in release by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2023-10-07 20:06:26 +0200;
-
5415529
Added the option to return dispersal and corrected orthogroup scores as separate variables in calculate_H() by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2023-10-07 20:04:19 +0200;
-
2b29723
Version bump in devel by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2023-10-07 20:04:59 +0200;
-
e9a3ad5
Added the option to return dispersal and corrected orthogroup scores as separate variables in calculate_H() by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2023-10-07 20:04:19 +0200;
-
ffae8b0
bump x.y.z version to odd y following creation of RELEASE_3_17 branch by
J Wokaty <jwokaty@users.noreply.github.com>
2023-04-25 11:37:54 -0400;
-
-
01cccb5
bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by
J Wokaty <jwokaty@users.noreply.github.com>
2023-04-25 11:37:54 -0400;
-
32e6bdb
(origin/RELEASE_3_16, RELEASE_3_16)
Bioconductor branch rename from master to devel by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2023-03-14 12:49:09 +0100;
-
8fb5a0e
Bioconductor branch rename from master to devel by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2023-03-14 12:49:09 +0100;
-
b3a2e59
Fixed bug in GHA workflow by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2023-01-24 08:53:20 +0100;
-
62198c7
Fixed bug in GHA workflow by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2023-01-24 08:53:20 +0100;
-
24ab224
Version bump in release: 1.2.1 by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2023-01-23 21:31:01 +0100;
-
ff46d01
Updated NEWS file by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2023-01-23 21:28:15 +0100;
-
42ff6d7
Version bump in devel: 1.3.1 by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2023-01-23 21:29:04 +0100;
-
598ea79
Updated NEWS file by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2023-01-23 21:28:15 +0100;
-
32bf423
Merge remote-tracking branch 'upstream/master' by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2023-01-23 21:19:22 +0100;
-
-
ee7a480
Added functions to extract summary stats from NCBI genomes and compare them to user-defined assembly stats by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2023-01-23 21:19:15 +0100;
-
d74c747
bump x.y.z version to odd y following creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2022-11-01 11:26:59 -0400;
-
-
4b086cb
bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2022-11-01 11:26:58 -0400;
-
-
c7b1c75
Changed r-lib/actions version tag in GHA workflow by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-10-20 17:52:15 +0200;
-
b3c76ac
Changed formula for synteny assessment to also consider SFT fit by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-10-20 10:00:48 +0200;
-
f4e3c31
(origin/RELEASE_3_15, RELEASE_3_15)
Version bump in release by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-10-11 10:35:42 +0200;
-
2041e80
Bug fix: number of duplications was not matching in elements and of the output by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-10-11 10:32:10 +0200;
-
691c44b
Version bump in devel by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-10-11 10:32:30 +0200;
-
f9ebcf5
Bug fix: number of duplications was not matching in elements and of the output by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-10-11 10:32:10 +0200;
-
5077042
Version bump in release by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-26 11:50:51 +0200;
-
589c87d
Added median in assess_orthogroups() by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-26 11:48:49 +0200;
-
e86df13
Version bump in devel by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-26 11:49:25 +0200;
-
ba852cd
Added median in assess_orthogroups() by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-26 11:48:49 +0200;
-
48c3e83
Version bump in release by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-21 13:38:30 +0200;
-
b1e8e1d
Updated NEWS.md and fixed denominator in formula for calculate_H() by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-21 13:37:24 +0200;
-
26097e9
Version bump in devel by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-21 13:37:41 +0200;
-
bf3a558
Updated NEWS.md and fixed denominator in formula for calculate_H() by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-21 13:37:24 +0200;
-
abfaa85
Version bump in release by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-20 21:29:45 +0200;
-
ba08433
Added scale param in calculate_H by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-20 21:28:07 +0200;
-
be906c4
Version bump in devel by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-20 21:28:37 +0200;
-
c7cc084
Added scale param in calculate_H by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-20 21:28:07 +0200;
-
211ad9d
Version bump in release by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-20 14:55:14 +0200;
-
aa53b8f
Added correction for overclustering in OG assessment and changed color of BUSCO plot for a darker yellow for better visualization by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-20 14:53:38 +0200;
-
5bbcf96
Version bump in devel by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-20 14:54:01 +0200;
-
051c777
Added correction for overclustering in OG assessment and changed color of BUSCO plot for a darker yellow for better visualization by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-09-20 14:53:38 +0200;
-
6830633
Version bump in release by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-08-31 17:34:53 +0200;
-
4313043
Bug fix: Removed rlang from Imports and fixed undocumented parameter by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-08-31 17:33:29 +0200;
-
e83a916
Version bump in devel by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-08-31 17:33:58 +0200;
-
44b6c1f
Bug fix: Removed rlang from Imports and fixed undocumented parameter by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-08-31 17:33:29 +0200;
-
8bd07d4
Version bump in release by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-08-31 17:06:58 +0200;
-
d08ff96
Increased test coverage and fixed bug in calculation of homogeneity scores by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-08-31 17:05:02 +0200;
-
ca44062
Version bump in devel by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-08-31 17:05:37 +0200;
-
d6d6410
Increased test coverage and fixed bug in calculation of homogeneity scores by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-08-31 17:05:02 +0200;
-
532acdd
bump x.y.z version to odd y following creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2022-04-27 15:47:35 -0400;
-
-
31c9e5b
bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2022-04-27 15:47:35 -0400;
-
4373963
Fixed R version in Depends and added a suggested biocViews entry by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-04-20 20:39:19 +0200;
-
fa394fb
Added option for DNA/RNA/AAStringSet object in run_busco() by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-04-20 18:16:06 +0200;
-
68339ad
Named sessionInfo() code chunk in vignettes 2 and 3 - possible bug in Bioc build system by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-03-21 20:38:23 +0100;
-
2edfb82
Added cogeqc to "Watched Tags" in Bioc Support site by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-03-21 20:21:20 +0100;
-
c391542
Removed interoperability with {Herper} by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-03-14 18:05:27 +0100;
-
1366881
Expanded package's description in DESCRIPTION and README by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-03-13 13:12:12 +0100;
-
1e3c6c2
Increased test coverage by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-03-13 10:24:44 +0100;
-
8ec7473
Included test coverage badge in README by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-03-13 09:58:50 +0100;
-
962f898
Set dpi = 100 in all vignettes containing plots by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-03-13 09:41:58 +0100;
-
d469389
Language revision in vignettes by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-03-13 09:22:11 +0100;
-
b926af4
Fixed affiliation in vignettes and non-standard evaluation issues by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-03-13 08:41:32 +0100;
-
7a188cc
Included complete affiliations in vignettes by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-03-12 12:41:27 +0100;
-
2832bdc
Included function plot_og_sizes() and updated vignette to document its usage by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-03-08 13:56:19 +0100;
-
4d122c3
Updated citation in README by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-02-01 11:26:43 +0100;
-
18cb926
Changed bibliography in vignette 03 by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-30 12:10:56 +0100;
-
8762bd5
Fixed Date bug in citation by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-30 12:04:32 +0100;
-
3f907c5
Fixed Date bug in citation by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-30 12:01:28 +0100;
-
e14f907
Added vignette 03 + Added biocViews + Updated affiliation by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-30 11:55:59 +0100;
-
4fc86cd
Added vignette 02 by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-07 20:38:56 -0300;
-
ef2e49d
Temporarily removed Windows from GHA by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-06 21:10:00 -0300;
-
bc26d4e
Changed cache version in GHA by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-06 20:55:46 -0300;
-
120d5ba
Changed GLPK version to 5.0 by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-06 20:49:44 -0300;
-
b459c3b
Fixed code to install GLPK by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-06 20:32:31 -0300;
-
f2e7e0e
Changed code to install GLPK from binary by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-06 20:21:14 -0300;
-
a9b6449
Piped yes with Pacman to install GLPK by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-06 20:12:56 -0300;
-
d4c44ff
Changed shell in Windows GHA by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-06 20:05:11 -0300;
-
08b6523
Trial: install GLPK on Windows with Pacman by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-06 19:41:56 -0300;
-
049d296
Changed cache version in GHA by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-06 18:26:21 -0300;
-
25a9171
Install WinGLPK on GHA by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-06 18:16:28 -0300;
-
a9b2d7e
Fixed code to install WinGLPK on GHA <a href="#2">#2</a> by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-06 18:14:31 -0300;
-
894d5e2
Fixed code to install WinGLPK on GHA by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-06 18:08:11 -0300;
-
36a650a
Added code to install GLPK on Windows GHA by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-06 17:57:55 -0300;
-
6275d42
Renamed vignettes 00 and 01 due to error in package check by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-06 16:10:52 -0300;
-
2207440
Included vignettes 00 and 01 by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2022-01-06 15:56:32 -0300;
-
742c475
Added {covr} to Suggests by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2021-12-29 12:33:53 -0300;
-
a9d2353
Included assess_synnet() and assess_synnet_list() with unit tests and example data set synnet.rda + Set testthat, covr and pkgdown in GHA to true by
almeidasilvaf <fabricio_almeidasilva@hotmail.com>
2021-12-29 12:07:26 -0300;