Bioconductor Code: clustifyr

Graph of clustifyr

01ae82e (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:43:29 -0400;
a5e5644 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:43:29 -0400;
b67b34b readme update by raysinensis <raysinensis@gmail.com> 2024-08-29 13:26:22 -0400;
d33cd20 pass maintenance back to Rui, and redoc by Kent Riemondy <kent.riemondy@gmail.com> 2024-08-27 14:48:41 -0600;
d755f11 (origin/RELEASE_3_19, RELEASE_3_19) pass maintenance back to Rui by Kent Riemondy <kent.riemondy@gmail.com> 2024-08-27 14:46:16 -0600;
d0870d9 bump patch version by Kent Riemondy <kent.riemondy@gmail.com> 2024-08-25 09:31:04 -0600;
7db8ab6 bump patch version by Kent Riemondy <kent.riemondy@gmail.com> 2024-08-25 09:30:01 -0600;
8224ebc Upkeep (#407) by Kent Riemondy <kent.riemondy@gmail.com> 2024-08-23 09:09:40 -0600;
9764d7f redoc by Kent Riemondy <kent.riemondy@gmail.com> 2024-08-23 08:03:30 -0600;
0daacd5 update maintainer email by Kent Riemondy <kent.riemondy@gmail.com> 2024-08-23 07:35:05 -0600;
f621538 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:20:53 -0400;
6d3d12e bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:20:53 -0400;
09b95ce - add R minimum version to prevent warning about data checks ASCII and uncompressed saves - remove unused hsPBMC_markers.txt data file by Kent Riemondy <kent.riemondy@gmail.com> 2024-04-22 09:18:26 -0600;
bb9b951 add pkgdown ref by Kent Riemondy <kent.riemondy@gmail.com> 2024-04-03 11:40:05 -0600;
bbc4fbe Seurat V5 compatability (#406) by Kent Riemondy <kent.riemondy@gmail.com> 2024-04-03 11:10:51 -0600;
0097813 fix merge by Kent Riemondy <kent.riemondy@gmail.com> 2023-11-07 10:27:45 -0700;
e59930a replace Seurat dependency with SeuratObject (#402) by Kent Riemondy <kent.riemondy@gmail.com> 2023-11-07 10:24:37 -0700;
0ae7c1f bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:19:27 -0400;
de3d2df (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:19:27 -0400;
df4193c update badge by Kent Riemondy <kent.riemondy@gmail.com> 2023-07-13 14:34:44 -0600;
fa64c2f update URL parsing, first column handling, conditionally use data.tab… (#399) by Kent Riemondy <kent.riemondy@gmail.com> 2023-07-13 13:32:13 -0600;
3d09053 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:15:27 -0400;
82ccda3 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:15:27 -0400;
4dad838 bump z version to propagate changes by Kent Riemondy <kent.riemondy@gmail.com> 2022-11-07 09:12:36 -0700;
1131c12 update broken link by Jay Hesselberth <jay.hesselberth@gmail.com> 2022-11-03 15:42:57 -0600;
bf746ec update coverage action by Jay Hesselberth <jay.hesselberth@gmail.com> 2022-11-03 13:59:08 -0600;
fc168e8 update gh actions by Jay Hesselberth <jay.hesselberth@gmail.com> 2022-11-03 13:48:28 -0600;
d85c644 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:21:20 -0400;
768cfde (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:21:20 -0400;
5e325f4 Merge remote-tracking branch 'upstream/master' by Kent Riemondy <kent.riemondy@gmail.com> 2022-10-04 09:11:54 -0600;
89df3b7 bump version by Kent Riemondy <kent.riemondy@gmail.com> 2022-10-04 08:34:40 -0600;
38178df fix a few notes and warnings by Kent Riemondy <kent.riemondy@gmail.com> 2022-10-04 08:33:35 -0600;
f417f78 check for missing colnames by Kent Riemondy <kent.riemondy@gmail.com> 2022-06-30 10:20:28 -0600;
672ba03 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:02:34 +0000;
dd864c8 delete old Rproj by Jay Hesselberth <jay.hesselberth@gmail.com> 2022-07-06 09:59:49 -0600;
ee6e661 url cleanup by Jay Hesselberth <jay.hesselberth@gmail.com> 2022-07-02 08:43:35 -0600;
a8fb9d3 add Seurat to Suggests by Jay Hesselberth <jay.hesselberth@gmail.com> 2022-07-02 08:16:15 -0600;
2904efa remove toc by Jay Hesselberth <jay.hesselberth@gmail.com> 2022-06-30 06:13:57 -0600;
0b4de06 clean up readme by Jay Hesselberth <jay.hesselberth@gmail.com> 2022-06-30 06:12:33 -0600;
77fb5dc fix hardcoded typo by raysinensis <raysinensis@gmail.com> 2022-04-28 10:37:02 -0400;
1ea1ffe bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:02:34 +0000;
0aa93bc (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:02:34 +0000;
bdc7400 fix pseudobulk_method in wrappers by raysinensis <raysinensis@gmail.com> 2022-04-05 11:28:19 -0400;
7265774 clustify with median and other ways of pseudobulk by raysinensis <raysinensis@gmail.com> 2022-04-05 11:15:48 -0400;
005d2fc update email by Kent Riemondy <kent.riemondy@gmail.com> 2022-03-10 09:24:43 -0700;
f0341a1 v1.7.3 by raysinensis <raysinensis@gmail.com> 2022-03-09 14:11:06 -0500;
2380441 022122 reknit by raysinensis <raysinensis@gmail.com> 2022-02-21 12:54:29 -0500;
a2d3d5f Merge branch 'master' of git.bioconductor.org:packages/clustifyr by raysinensis <raysinensis@gmail.com> 2022-02-21 12:50:34 -0500;
9f99cbd update test action by Jay Hesselberth <jay.hesselberth@gmail.com> 2022-02-21 07:31:59 -0700;
f3b49ab add missing topic by Jay Hesselberth <jay.hesselberth@gmail.com> 2022-02-20 19:35:35 -0700;
1f4e594 use rbitemplate for pkgdown site by Jay Hesselberth <jay.hesselberth@gmail.com> 2022-02-20 19:18:38 -0700;
7336d06 Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2022-01-14 11:53:45 -0500;
18e9283 seurat v4 var feature loc by raysinensis <raysinensis@gmail.com> 2021-12-16 23:40:15 -0500;
02f9db0 calc_distance by raysinensis <raysinensis@gmail.com> 2021-11-18 13:38:58 -0700;
31176e5 max and min for average_clusters by raysinensis <raysinensis@gmail.com> 2021-11-17 12:56:29 -0700;
8b6cadf Merge branch 'master' of git.bioconductor.org:packages/clustifyr by raysinensis <raysinensis@gmail.com> 2021-11-01 12:18:55 -0600;
45e9113 gsea_example_fix by raysinensis <raysinensis@gmail.com> 2021-11-01 12:18:07 -0600;
55d7f54 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:57:20 +0000;
e07d1df (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:57:20 +0000;
065d15d truncated mean and trimean by raysinensis <raysinensis@gmail.com> 2021-10-04 14:40:06 -0600;
9eb5338 new readme with q&a on overlapping genes output by raysinensis <raysinensis@gmail.com> 2021-09-28 16:05:24 -0600;
b87f48c fix shiny by raysinensis <raysinensis@gmail.com> 2021-09-20 17:36:00 -0600;
630cf58 fix bioc by raysinensis <raysinensis@gmail.com> 2021-09-20 17:16:19 -0600;
f32c812 fix documentation by raysinensis <raysinensis@gmail.com> 2021-09-20 16:12:12 -0600;
7f51dca output overlapping genes from clustify_lists by raysinensis <raysinensis@gmail.com> 2021-09-20 14:59:09 -0600;
5e19200 Add RBI as funder by Jay Hesselberth <jay.hesselberth@gmail.com> 2021-09-19 07:06:35 -0600;
7e8bc37 Update bioc workflow by Jay Hesselberth <jay.hesselberth@gmail.com> 2021-09-18 13:43:28 -0600;
471e19e Update pkgdown workflow by Jay Hesselberth <jay.hesselberth@gmail.com> 2021-09-18 12:57:13 -0600;
604c800 Update CITATION by Jay Hesselberth <jay.hesselberth@gmail.com> 2021-09-18 12:40:04 -0600;
e50dc32 readme update by raysinensis <raysinensis@gmail.com> 2021-09-07 01:57:53 -0600;
b4220b4 update to rankdiff by raysinensis <raysinensis@gmail.com> 2021-08-29 16:53:45 -0600;
e8b8dd9 v1.5.1 bump by raysinensis <raysinensis@gmail.com> 2021-08-04 15:15:17 -0600;
974000b uneven lists by raysinensis <raysinensis@gmail.com> 2021-08-04 15:07:45 -0600;
b362240 document new "input_marker" approach, and add in git clone monitoring by raysinensis <raysinensis@gmail.com> 2021-08-02 07:47:49 -0600;
35748e2 overlap markers mode for clustify_lists by raysinensis <raysinensis@gmail.com> 2021-07-18 21:34:10 -0600;
b39af69 readme fix by raysinensis <raysinensis@gmail.com> 2021-07-18 20:30:07 -0600;
3950019 variable genes finding in more default seurat assay names by raysinensis <raysinensis@gmail.com> 2021-07-18 20:29:01 -0600;
fea7a64 0721 readme update by raysinensis <raysinensis@gmail.com> 2021-07-01 18:16:29 -0600;
4f53d4e badge update by raysinensis <raysinensis@gmail.com> 2021-06-04 21:55:17 -0600;
ef1a10b readme update by raysinensis <raysinensis@gmail.com> 2021-06-04 21:52:29 -0600;
2a15c8b update readme after bioc version bump by raysinensis <raysinensis@gmail.com> 2021-05-21 03:13:09 -0600;
e6c7f97 Merge branch 'master' of git.bioconductor.org:packages/clustifyr by raysinensis <raysinensis@gmail.com> 2021-05-21 03:10:08 -0600;
bf37d92 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:49:30 +0000;
7a53859 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:49:30 +0000;
f685aa7 readme update, clustify_lists by raysinensis <raysinensis@gmail.com> 2021-04-27 06:08:08 -0600;
be1c017 more examples by raysinensis <raysinensis@gmail.com> 2021-04-08 07:44:00 -0600;
77cab60 readme new by raysinensis <raysinensis@gmail.com> 2021-04-07 23:46:15 -0600;
1626ab0 missing yml entries by raysinensis <raysinensis@gmail.com> 2021-04-07 23:44:06 -0600;
a8f008d remove seurat2 parts of examples by raysinensis <raysinensis@gmail.com> 2021-04-07 22:56:34 -0600;
e525ab6 remove seurat2 parts of vignette by raysinensis <raysinensis@gmail.com> 2021-04-07 22:09:21 -0600;
6c029a4 remove seurat2 parts of readme by raysinensis <raysinensis@gmail.com> 2021-04-07 21:20:03 -0600;
1632358 remove seurat2 tests by raysinensis <raysinensis@gmail.com> 2021-04-07 18:35:12 -0600;
906257d fixing bioc Rcheck issue by deprecating seurat2 support/detection by raysinensis <raysinensis@gmail.com> 2021-04-07 18:20:11 -0600;
b18c703 update by raysinensis <raysinensis@gmail.com> 2021-03-26 16:29:02 -0600;
345f1d4 v1.3.3 paperwork by raysinensis <raysinensis@gmail.com> 2021-03-04 06:31:15 -0700;
ba4f312 hint for app dependency installation by raysinensis <raysinensis@gmail.com> 2021-03-01 12:40:19 -0700;
90649ed shinyapp update by raysinensis <raysinensis@gmail.com> 2021-03-01 12:29:10 -0700;
656d5c5 # of downloads from bioc by raysinensis <raysinensis@gmail.com> 2021-03-01 02:36:33 -0700;
61140f3 Rankdiff (#382) by Ray Fu <raysinensis@gmail.com> 2021-03-01 02:22:11 -0700;
a9f6aa2 Rankdiff (#381) by Ray Fu <raysinensis@gmail.com> 2021-02-26 18:30:39 -0700;