<!-- README.md is generated from README.Rmd. Please edit that file -->
# CellScape
[](https://www.bioconductor.org/packages/cellscape)
[](https://bioconductor.org/packages/stats/bioc/cellscape)
[](https://github.com/ShixiangWang/cellscape/actions/workflows/R-CMD-check.yaml)
CellScape is a visualization tool for integrating single cell phylogeny
with genomic content to clearly display evolutionary progression and
tumour heterogeneity.
## Installation
To install CellScape, type the following commands in R:
``` r
# Bioc release version
if (!requireNamespace("BiocManager", quietly = TRUE)) {
install.packages("BiocManager")
}
BiocManager::install("cellscape")
# GitHub devel version
BiocManager::install("ShixiangWang/cellscape")
```
## Examples
Check the examples by:
``` r
?cellscape
```
## Documentation
To view the documentation for CellScape, type the following command in
R:
``` r
?cellscape
```
or:
``` r
browseVignettes("cellscape")
```
## Citation
- [Smith, Maia A., et al. “E-scape: interactive visualization of
single-cell phylogenetics and cancer evolution.” ***Nature Methods***
14.6 (2017): 549-550.](https://www.nature.com/articles/nmeth.4303)
## Maintainer
- [Shixiang Wang](https://github.com/ShixiangWang)
