Package: celaref
Title: Single-cell RNAseq cell cluster labelling by reference
Version: 1.25.0
Authors@R: person("Sarah", "Williams", email = "sarah.williams1@monash.edu", role = c("aut", "cre"))
Description: After the clustering step of a single-cell RNAseq experiment, this
   package aims to suggest labels/cell types for the clusters, on the basis of 
   similarity to a reference dataset. It requires a table of read counts per 
   cell per gene, and a list of the cells belonging to each of the clusters, 
   (for both test and reference data). 
Depends: R (>= 3.5.0),
   SummarizedExperiment
Imports:
   MAST,
   ggplot2,
   Matrix,
   dplyr,
   magrittr,
   stats,
   utils,
   rlang,
   BiocGenerics,
   S4Vectors,
   readr,
   tibble,
   DelayedArray
Suggests:
    limma,
    parallel,
    knitr,
    rmarkdown,
    ExperimentHub,
    testthat
biocViews: SingleCell
VignetteBuilder: knitr
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1