Bioconductor Code: bnem

Graph of bnem

ea50de2 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:53:50 -0400;
e76986f (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:53:50 -0400;
3ac5d3e bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:29:51 -0400;
f794ed7 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:29:51 -0400;
c0ad922 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:28:26 -0400;
ba0965c (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:28:26 -0400;
7315914 (origin/RELEASE_3_17, RELEASE_3_17) added runit to suggests by mpirkl <martinpirkl@yahoo.de> 2023-05-23 10:35:29 +0200;
38ae099 Merge remote-tracking branch 'upstream/devel' into devel by mpirkl <martinpirkl@yahoo.de> 2023-05-23 10:32:29 +0200;
d40b0bc added runit to suggests by mpirkl <martinpirkl@yahoo.de> 2023-05-23 10:32:09 +0200;
92f90de added RUnit to suggests by mpirkl <martinpirkl@yahoo.de> 2023-05-22 09:03:52 +0200;
f22b794 Merge commit '87911ea5a1fbf4cd4552b45be3a5ff697067d642' by mpirkl <martinpirkl@yahoo.de> 2023-04-26 07:25:12 +0200;
87911ea bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:25:22 -0400;
bf36c4d bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:25:22 -0400;
ba72767 added BiocStyle to suggests by mpirkl <martinpirkl@yahoo.de> 2023-04-06 09:12:08 +0200;
69bbfe7 hoping to fix rowSums etc. by suggesting MatrixGenerics in addition to BiocGenerics by mpirkl <martinpirkl@yahoo.de> 2023-03-30 09:17:41 +0200;
c3803ae Merge remote-tracking branch 'upstream/master' by mpirkl <martinpirkl@yahoo.de> 2022-12-02 11:16:11 +0100;
06869de bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:23:33 -0400;
150583c (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:23:33 -0400;
e472cb1 Merge remote-tracking branch 'upstream/master' by mpirkl <martinpirkl@yahoo.de> 2022-06-30 10:24:10 +0200;
c9d3b64 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:11:22 +0000;
140e9fb (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:11:22 +0000;
ac459bc bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:05:36 +0000;
7189a51 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:05:36 +0000;
43cf9d2 some editing of simulations by Martin Pirkl <martinpirkl@yahoo.de> 2021-10-08 11:12:44 +0200;
95df88c fixed s4 class subsetting by Martin Pirkl <martinpirkl@yahoo.de> 2021-08-25 08:57:39 +0200;
1459496 fixed typo by mpirkl <martinpirkl@yahoo.de> 2021-08-23 16:53:17 +0200;
b2e97bb addressed errors regarding logical length > 1 by mpirkl <martinpirkl@yahoo.de> 2021-07-28 11:01:06 +0200;
c064841 Merge remote-tracking branch 'upstream/master' into master by mpirkl <martinpirkl@yahoo.de> 2021-05-21 10:13:55 +0200;
41d3c79 removed whitespace by mpirkl <martinpirkl@yahoo.de> 2021-05-21 10:01:21 +0200;
a3914e1 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:58:21 +0000;
3109efd (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:58:21 +0000;
d1144e7 fxied package name in vignette by mpirkl <martinpirkl@yahoo.de> 2021-05-05 15:55:02 +0200;
4c56be8 updated readme by mpirkl <martinpirkl@yahoo.de> 2021-05-05 15:51:54 +0200;
2726b81 added rmarkdown to suggest by mpirkl <martin.pirkl@bsse.ethz.ch> 2021-04-16 16:20:30 +0200;
b28bb63 added some more options to application script by mpirkl <martin.pirkl@bsse.ethz.ch> 2021-02-04 11:02:34 +0100;
c8d92f9 fixed missing vignette title and authors by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-12-08 14:48:20 +0100;
13d1574 adding mention of processDataBCR to repository readme; cleaned bnem_app.r by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-11-27 11:11:24 +0100;
e63b814 adapted findResiduals function to latest epiNEM update by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-11-26 09:07:25 +0100;
1c00c05 bioconductor revision by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-11-17 12:13:51 +0100;
07e479d bump by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-11-02 08:46:18 +0100;
9bf75d0 added authors@R by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-11-02 08:45:59 +0100;
dd4b259 nicer vignette example by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-10-30 09:50:43 +0100;
9dad7b6 some bugfixes and code cleaning by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-10-16 12:06:15 +0200;
2656844 revision of help files and function arguments; added simple unit test for the score function by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-10-16 10:25:59 +0200;
015767e added GA with default stop crit to analysis by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-10-14 09:41:27 +0200;
9ae6a91 package cleaning and vignette update by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-10-13 15:32:53 +0200;
c5892db fixed some runtime and simulation issues by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-10-09 16:47:36 +0200;
a1105d0 simualte standard nem with inhibitions by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-08-28 12:04:04 +0200;
8532c85 changed stimulation node to S0g by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-07-13 10:59:11 +0200;
00370d3 added null gene (this could make trouble); verbose output more efficient by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-05-29 08:08:11 +0200;
3fc4dbc added gitignore; renamed R files by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-05-18 09:49:42 +0200;
907f2ff some bugfixing by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-05-14 14:34:52 +0200;
7bda205 update boolean simulation by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-05-13 17:56:11 +0200;
363b38b fixed vignette and help files by mpirkl <martin.pirkl@bsse.ethz.ch> 2020-05-11 09:12:31 +0200;
a547fb6 test with no negation by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-09-03 16:29:06 +0200;
b8cd37c fixed network sampling and and gate probability by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-08-30 16:03:22 +0200;
5200275 updated help files speed improvements by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-08-30 11:12:24 +0200;
db61b45 improved network sampling by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-08-21 17:47:10 +0200;
7463a04 network sparseness added to sim by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-08-19 17:30:31 +0200;
431ea9b bugfix + cleanup by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-08-16 16:32:24 +0200;
45121d1 renamed bcr process, bugfix single inhibited egene by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-08-16 13:39:50 +0200;
14efe9f finished vingette and added ctrl_vs_stim_inhibit in expected by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-08-16 10:40:17 +0200;
05317f6 update vignette by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-08-15 17:10:12 +0200;
e892c53 bcr data helpfile update by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-08-15 16:40:12 +0200;
a57da8f long line shortened by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-08-15 16:39:21 +0200;
e87a8b1 debugging help files to get through check by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-08-15 16:30:52 +0200;
31dcab0 added functions for running and plotting bootstraps and data processing by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-08-15 15:42:24 +0200;
136bf1d ??? by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-08-13 17:16:51 +0200;
492d237 amended hpc commands by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-07-26 16:55:05 +0200;
fdcc5e7 bugfixing plus added plot functions by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-07-24 16:52:41 +0200;
0187bb1 changed how a dag is sampled; added application file in other (not built) by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-07-19 10:16:55 +0200;
20ee3c1 removed warnings and errors during (bioc-)Check by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-07-17 16:30:11 +0200;
0bab271 update help files by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-07-14 08:38:08 +0200;
0a84f83 successfully build with fixed vignette by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-07-13 13:37:45 +0200;
9a810aa moved function into more concise files by MartinFXP <martin.pirkl@bsse.ethz.ch> 2019-07-12 18:00:00 +0200;
965ee60 downgrade to R 3.3 by MartinFXP <martin.pirkl@bsse.ethz.ch> 2017-06-13 13:17:17 +0200;
0973f62 added epinem2bg by MartinFXP <martin.pirkl@bsse.ethz.ch> 2017-01-18 09:42:42 +0100;
48e5d42 roxygen and vignette update by MartinFXP <martin.pirkl@bsse.ethz.ch> 2017-01-17 17:26:03 +0100;
f3345d3 update vignette and roxygen stuff by MartinFXP <martin.pirkl@bsse.ethz.ch> 2017-01-17 16:15:31 +0100;
2ea26f6 readme update by MartinFXP <martin.pirkl@bsse.ethz.ch> 2017-01-17 11:47:42 +0100;
1007442 updated roxygen code by MartinFXP <martin.pirkl@bsse.ethz.ch> 2017-01-17 11:45:19 +0100;
7b6076d roxygen update by MartinFXP <martin.pirkl@bsse.ethz.ch> 2017-01-16 18:18:13 +0100;
eec4dbe vignette to rmd and added some roxygen stuff by MartinFXP <martin.pirkl@bsse.ethz.ch> 2017-01-16 18:09:57 +0100;
7399289 bugfix heatmapOP by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-23 14:27:30 +0100;
ad1c517 bugfix heatmapOP by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-23 14:18:54 +0100;
776b9ab improved design of heatmapOP by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-23 14:16:32 +0100;
8d9ff5b updated vignette by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-09 15:26:19 +0100;
ae9b7bb fixed findResiduals by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-09 15:21:40 +0100;
9b0c7d1 update NAMESAPCE added findResiduals by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-09 14:26:23 +0100;
387989f help file bugfix by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-09 14:20:19 +0100;
88cbbc4 updated residuals function + help file by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-09 13:41:37 +0100;
d7bbbbb added prior egene attachment by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-09 11:53:09 +0100;
09b3eec fixed help examples by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-04 16:52:33 +0100;
98f54d9 Merge remote-tracking branch 'origin/master' by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-04 11:07:21 +0100;
9ee9d04 preprocessinput bugfix by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-04 11:07:07 +0100;
e85f417 Update README by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-04 10:00:45 +0100;
984c0ae update vignette by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-04 09:59:10 +0100;
06edfcd update vignette by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-04 09:52:34 +0100;
be575e4 made the repo a proper package by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-11-04 09:43:58 +0100;
f6d78bc sort gates in convertGraph by MartinFXP <martin.pirkl@bsse.ethz.ch> 2016-09-29 16:30:27 +0200;