## biobtreeR Bioconductor R package for genomic research via [biobtree](https://github.com/tamerh/biobtree). It aims to provide an alternative to existing packages with abilty process large and diverse datasets effectievly and allows executing basic or advanced queries . For more detail and documentation check the Bioconductor [page](https://bioconductor.org/packages/3.11/bioc/html/biobtreeR.html) ## Install ```r if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("biobtreeR") ``` ## Usage ```r library(biobtreeR) # directory for the tool files bbUseOutDir("specify your directory") # default database for most studied dataset and organism genomes # once it is retrieved it is saved to your directory for later reuse # check document for included dataset or other builtin databases or build custom data bbBuiltInDB() # starts server for executing queries inside R pipelines and provide web ui for expolaration with examples # web interface address http://localhost:8888/ui/ bbStart() ``` ## Demo Demo of web interface which covers all the datasets with examples https://www.ebi.ac.uk/~tgur/biobtree/