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  2. Graph
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  • 732426e (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:20:45 -0400;
  • 6188ffb (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:20:45 -0400;
  • db1b4fd bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:10:49 -0400;
  • 9710d81 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:10:49 -0400;
  • d591601 Bump version to 1.81.2 by J Wokaty <jwokaty@users.noreply.github.com> 2024-01-24 16:05:34 -0500;
  • e680661 Converted useDataPkgs.Rnw to Rmd (updated) (#10) by Manvi Yaduvanshi <155363925+manviyadu1shi@users.noreply.github.com> 2024-01-25 02:33:16 +0530;
  • a6c45e4 Bump version to 1.81.1 by J Wokaty <jwokaty@users.noreply.github.com> 2024-01-08 23:22:20 -0500;
  • 4a5f5cc Convert file to chroRmd (#4) by Kritika Verma <95202116+SunSummoner@users.noreply.github.com> 2024-01-09 09:48:29 +0530;
  • 70bf561 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:31:23 -0400;
  • 45a42c3 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:31:23 -0400;
  • 702f22c bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 09:38:15 -0400;
  • ca6415a (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 09:38:15 -0400;
  • 84b32d4 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 10:34:51 -0400;
  • 0181d5c (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 10:34:51 -0400;
  • 20f21c3 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 14:54:23 +0000;
  • 200c717 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 14:54:23 +0000;
  • bd601f0 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:45:29 +0000;
  • 67ac76a (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:45:29 +0000;
  • f4b8119 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:32:35 +0000;
  • 9c8cb9d (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:32:35 +0000;
  • 056d81c version bump and dependency update by Martin Morgan <Martin.Morgan@RoswellPark.org> 2021-03-14 08:37:24 -0400;
  • 95fef23 remove homology vignette by Martin Morgan <Martin.Morgan@RoswellPark.org> 2021-03-10 05:08:05 -0500;
  • 8144b7a bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:21:39 -0400;
  • 98cdb12 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:21:39 -0400;
  • 7c53c92 Also switch from RCurl::getURL() to httr::GET() in blastSequences() by Hervé Pagès <hpages.on.github@gmail.com> 2020-10-13 18:11:42 -0700;
  • 89bd272 Import setNames from the stats package by Hervé Pagès <hpages.on.github@gmail.com> 2020-10-13 16:42:27 -0700;
  • 64a6118 Fix accessionToUID() error on Windows by Hervé Pagès <hpages.on.github@gmail.com> 2020-10-13 16:37:27 -0700;
  • 3848892 Work around HTTP Error 429 "Too Many Requests" that we see on some servers by Hervé Pagès <hpages@fredhutch.org> 2020-08-13 17:29:29 -0700;
  • 9a6f339 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:07:46 +0000;
  • a63378f (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:07:46 +0000;
  • 013fea0 Fix "length > 1 in coercion to logical" bugs by Hervé Pagès <hpages@fredhutch.org> 2020-01-26 18:04:47 -0800;
  • a089c9f bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:34:29 -0400;
  • e272e0b (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:07:20 -0400;
  • e10a18a bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:10:28 -0400;
  • 19af0b3 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:01 -0400;
  • 9d8f87d (origin/RELEASE_3_8, RELEASE_3_8) Fixed conflicts in version number by Jim MacDonald <jmacdon@ogopogo.deohs.washington.edu> 2019-03-07 13:23:45 -0800;
  • b8f74c5 Bump version by Jim MacDonald <jmacdon@ogopogo.deohs.washington.edu> 2019-03-07 12:15:21 -0800;
  • ee7e9d4 Bump version by Jim MacDonald <jmacdon@ogopogo.deohs.washington.edu> 2019-03-07 12:13:46 -0800;
  • acffa32 Fixed bug in getAnnMap where the db was not being correctly detected. by Jim MacDonald <jmacdon@ogopogo.deohs.washington.edu> 2019-03-07 09:14:24 -0800;
  • 6849095 Fixed bug in getAnnMap where the db was not being correctly detected. by Jim MacDonald <jmacdon@ogopogo.deohs.washington.edu> 2019-03-07 09:13:02 -0800;
  • e4b9714 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:26 -0400;
  • 411fc62 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:40 -0400;
  • 19ba729 replace BiocInstaller::biocLite() with BiocManager::install() by vobencha <valerie.obenchain@roswellpark.org> 2018-07-19 13:22:28 -0700;
  • 5a8bc32 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:36 -0400;
  • d1b5dd5 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:34:54 -0400;
  • 95ec3b0 (origin/RELEASE_3_6, RELEASE_3_6) port a0bc684 -- reduce query size in vignette by Martin Morgan <martin.morgan@roswellpark.org> 2018-03-20 17:08:59 -0400;
  • 01e950e version bump by Martin Morgan <martin.morgan@roswellpark.org> 2018-03-20 17:09:34 -0400;
  • a0bc684 reduce query size in vignette by Martin Morgan <martin.morgan@roswellpark.org> 2018-03-20 17:08:59 -0400;
  • bf656c5 Modifications to the help page for getGOTerm. Previously the example used static GO terms, which will fail if any one gets dropped from GO. We now use a random sample of GOIDs. by Jim MacDonald <jmacdon@ogopogo.deohs.washington.edu> 2017-11-12 12:12:45 -0800;
  • 7d6b536 Modifications to the help page for getGOTerm. Previously the example used static GO terms, which will fail if any one gets dropped from GO. We now use a random sample of GOIDs. by Jim MacDonald <jmacdon@ogopogo.deohs.washington.edu> 2017-11-12 12:12:45 -0800;
  • 664002c Forgot to add the AllGenerics.R file in previous commit. by Jim MacDonald <jmacdon@ogopogo.deohs.washington.edu> 2017-11-10 13:12:03 -0800;
  • ddf8b7f Converted isValidKey and allValidKey to S4, so they can take as input an installed AnnotationDb package or a bare AnnotationDb object, for example one that was downloaded from the AnnotationHub. by Jim MacDonald <jmacdon@ogopogo.deohs.washington.edu> 2017-11-08 14:50:47 -0800;
  • eb8714a bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:04 -0400;
  • 4899827 bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:38:08 -0400;
  • 90038c9 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 860cc5b (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 2a566c6 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • f32f1e7 (origin/RELEASE_3_4, RELEASE_3_4) merge r125378, URLencode blastSequence by Martin Morgan <mtmorgan@fhcrc.org> 2016-12-21 17:16:17 +0000;
  • f3ce815 URLencode blastSequence query by Martin Morgan <mtmorgan@fhcrc.org> 2016-12-21 17:08:27 +0000;
  • 71d05f0 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 328314b Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • c46a67f bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • d06b04f (origin/RELEASE_3_3, RELEASE_3_3) port -c121026, use https:// for NCBI by Martin Morgan <mtmorgan@fhcrc.org> 2016-10-07 23:23:16 +0000;
  • 4bdcb9f cleanup NAMESPACE-related warnings / notes by Martin Morgan <mtmorgan@fhcrc.org> 2016-09-17 05:44:17 +0000;
  • cf90bb4 use https: rather than http: for NCBI access by Martin Morgan <mtmorgan@fhcrc.org> 2016-09-17 05:31:44 +0000;
  • d62a083 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 3c282e5 Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 8b7450f Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 245faaf import DBI::dbListTables(); RSQLite (and hence DBI) no longer loaded in AnnotationDbi::dbFileConnect() by Valerie Obenchain <vobencha@fhcrc.org> 2016-04-19 20:49:01 +0000;
  • cf882e8 cleanup: blastSequences documentation typo by Martin Morgan <mtmorgan@fhcrc.org> 2016-02-05 12:05:57 +0000;
  • 0661dd4 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 40b1268 (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 9609162 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • b7a67ab improve query retrieval strategy by Martin Morgan <mtmorgan@fhcrc.org> 2015-07-19 17:01:15 +0000;
  • db62930 support multipe sequences in blastSequence by Martin Morgan <mtmorgan@fhcrc.org> 2015-07-19 16:06:31 +0000;
  • e690db1 missing NAMESPACE import by Martin Morgan <mtmorgan@fhcrc.org> 2015-07-19 09:06:55 +0000;
  • c2e8f4d (origin/RELEASE_3_1, RELEASE_3_1) At Martins request this defuncts the probesByLL function so that this package can legally be re-packaged. by Marc Carlson <mcarlson@fhcrc.org> 2015-07-10 22:27:07 +0000;
  • fb80a59 defunct probeByLL by Martin Morgan <mtmorgan@fhcrc.org> 2015-07-09 13:21:31 +0000;
  • 14a52fc Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 2641e14 Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • 5ec89a0 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 0023d7c Add \alias{chromLocation} to make it easier for the user to find the man page for chromLocation objects. This will also make \link[annotate]{chromLocation} (from the organism_species man page in BiocGenerics) a valid link. by Herve Pages <hpages@fhcrc.org> 2015-03-25 23:24:26 +0000;
  • d1b4976 Fixes a bug in an old vignette caused be new code changes. by Marc Carlson <mcarlson@fhcrc.org> 2015-03-20 22:35:40 +0000;
  • f56cae5 remove definition of organism() generic (now in BiocGenerics) by Herve Pages <hpages@fhcrc.org> 2015-03-18 20:49:49 +0000;
  • e159e0d Sync "fileName" method definition with renaming of 1st arg ('x' -> 'object') in the definition of the fileName() generic in BiocGenerics. by Herve Pages <hpages@fhcrc.org> 2015-02-28 10:40:35 +0000;
  • 3274bce oops, need to rename arg all the way... by Herve Pages <hpages@fhcrc.org> 2015-02-28 00:25:54 +0000;
  • 7ad25e2 depends on latest version of BiocGenerics by Herve Pages <hpages@fhcrc.org> 2015-02-28 00:06:09 +0000;
  • 342438f remove local fileName() generic and use new generic from BiocGenerics instead by Herve Pages <hpages@fhcrc.org> 2015-02-27 23:56:18 +0000;
  • bca28c8 Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • 7ab0d3c (origin/RELEASE_3_0, RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • 50648e0 Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • e5a785a (origin/RELEASE_2_14, RELEASE_2_14) Bug fix needed because of URI change for NCBI by Marc Carlson <mcarlson@fhcrc.org> 2014-07-16 00:27:15 +0000;
  • 2ee3fa1 fixes a build issue caused by a change in the path to NCBI by Marc Carlson <mcarlson@fhcrc.org> 2014-07-15 23:59:57 +0000;
  • 17f533c cleanup NAMESPACE and update deps by Herve Pages <hpages@fhcrc.org> 2014-05-04 23:19:26 +0000;
  • 78b7c7b various blastSequences timing tweaks by Martin Morgan <mtmorgan@fhcrc.org> 2014-04-25 22:15:31 +0000;
  • 9c377ce documentation tidy by Martin Morgan <mtmorgan@fhcrc.org> 2014-04-21 18:25:29 +0000;
  • 8c5de84 blastSequences alternatives for return value by Martin Morgan <mtmorgan@fhcrc.org> 2014-04-21 17:05:55 +0000;
  • b2b91a6 blastSequences enhancements by Martin Morgan <mtmorgan@fhcrc.org> 2014-04-21 14:43:26 +0000;
  • 61f709f final tweaks by Martin Morgan <mtmorgan@fhcrc.org> 2014-04-12 01:53:35 +0000;
  • 3f4c54c misc code cleanup by Martin Morgan <mtmorgan@fhcrc.org> 2014-04-12 01:14:13 +0000;