Name Mode Size
R 040000
inst 040000
man 040000
tests 040000
vignettes 040000
.BBSoptions 100644 0 kb
.gitignore 100644 0 kb
DESCRIPTION 100644 1 kb
LICENSE 100644 18 kb
NAMESPACE 100644 1 kb
README 100644 2 kb
README
8888b. 88888b. 88888b. 88888b.d88b. 8888b. 88888b. "88b 888 "88b 888 "88b 888 "888 "88b "88b 888 "88b .d888888 888 888 888 888 888 888 888 .d888888 888 888 888 888 888 888 888 888 888 888 888 888 888 888 d88P "Y888888 888 888 888 888 888 888 888 "Y888888 88888P" 888 888 888 This is the annmap BioConductor package for use with the annmap database available from: https://figshare.manchester.ac.uk/articles/dataset/ANNMAP_Database/16685071 For instructions on how to install that database, please see the README.TXT file inside the downloads found on that page. QUICKSTART: After installing this package, you will need to create a databases.txt file inside a folder called .annmap in your home directory. An example of this file can be found in the root of this source package. This example file shows 2 databases installed on a MySQL server on the local machine, with the 'username' dbuser and 'password' dbpwd The 'port' field can be left blank if you are using the standard MySQL port The 'password' can be left blank if you are not using a password All elements should be tab separated (tabs are still required, even if the element is being left blank) The 'name' field is simply a user defined name for this database, which can be passed to annmapConnect() as a parameter, or will be displayed to the user in a menu if annmapConnect() is called with no parameters Please let me know of any issues at marek.dynowski(at)cruk.manchester.ac.uk