Bioconductor Code: SeqArray

Graph of SeqArray

aed0b3e (HEAD -> devel, origin/devel, origin/HEAD) update seqBlockApply() by Xiuwen Zheng <zhengxwen@gmail.com> 2025-03-23 13:09:13 -0500;
9274200 digest in seqRecompress() by Xiuwen Zheng <zhengxwen@gmail.com> 2025-03-21 21:06:36 -0500;
720af21 update seqResetVariantID() by Xiuwen Zheng <zhengxwen@gmail.com> 2025-03-06 21:45:39 -0600;
2735544 (origin/RELEASE_3_20, RELEASE_3_20) digest to Import field by Xiuwen Zheng <zhengxwen@gmail.com> 2025-02-22 01:58:47 -0600;
d971a98 update seqVCF2GDS() by Xiuwen Zheng <zhengxwen@gmail.com> 2025-02-01 16:15:40 -0600;
afa5789 update & fix seqVCF2GDS() by Xiuwen Zheng <zhengxwen@gmail.com> 2025-02-01 16:11:42 -0600;
4081fdb update seqVCF2GDS() by Xiuwen Zheng <zhengxwen@gmail.com> 2025-01-10 12:56:40 -0600;
5765cfc faster seqVCF_Header by Xiuwen Zheng <zhengxwen@gmail.com> 2025-01-07 21:50:22 -0600;
ae6fd76 update by Xiuwen Zheng <zhengxwen@gmail.com> 2024-12-25 16:42:47 -0600;
9bf676f (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:45:09 -0400;
a43d555 bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:45:09 -0400;
064c4ad update NEWS by Xiuwen Zheng <zhengxwen@gmail.com> 2024-10-22 01:28:05 -0500;
3a594a2 (origin/RELEASE_3_19, RELEASE_3_19) USE_NO_REMAP=true by Xiuwen Zheng <zhengxwen@gmail.com> 2024-09-29 14:48:35 -0500;
8c57d5d USE_NO_REMAP=true by Xiuwen Zheng <zhengxwen@gmail.com> 2024-09-29 14:27:53 -0500;
0ee14c8 minor update by Xiuwen Zheng <zhengxwen@gmail.com> 2024-09-21 13:16:37 -0500;
520ebe4 fix seqVCF_Header by Xiuwen Zheng <zhengxwen@gmail.com> 2024-09-12 20:57:57 -0500;
d99d94d fix seqVCF_Header() by Xiuwen Zheng <zhengxwen@gmail.com> 2024-09-12 20:48:59 -0500;
0ef0a88 fix by Xiuwen Zheng <zhengxwen@gmail.com> 2024-08-03 16:36:21 -0500;
b7589d0 fix by Xiuwen Zheng <zhengxwen@gmail.com> 2024-08-03 16:34:01 -0500;
54b8445 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:31:00 -0400;
9408216 bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:31:00 -0400;
7f4fc2c attempt to comply with gcc13 by Xiuwen Zheng <zhengxwen@gmail.com> 2024-04-27 02:11:30 -0500;
9c61616 update seqApply() by Xiuwen Zheng <zhengxwen@gmail.com> 2024-04-23 20:17:46 -0500;
018ebf1 update NEWS by Xiuwen Zheng <zhengxwen@gmail.com> 2024-04-11 22:09:30 -0500;
e2bc59b fix -Woverflow by Xiuwen Zheng <zhengxwen@gmail.com> 2024-04-10 22:18:52 -0500;
445ebba fix by Xiuwen Zheng <zhengxwen@gmail.com> 2024-04-03 23:49:40 -0500;
ae23877 (origin/RELEASE_3_18, RELEASE_3_18) fix SeqArray_v1.42.3 by Xiuwen Zheng <zhengxwen@gmail.com> 2024-04-02 20:20:28 -0500;
300e056 new features by Xiuwen Zheng <zhengxwen@gmail.com> 2024-03-29 23:38:50 -0500;
ceb8c36 bug fix by Xiuwen Zheng <zhengxwen@gmail.com> 2024-03-22 23:48:58 -0500;
5b624d8 system headers before R header files by Xiuwen Zheng <zhengxwen@gmail.com> 2024-02-16 22:52:19 -0600;
2f9f929 system headers before R header files by Xiuwen Zheng <zhengxwen@gmail.com> 2024-02-16 22:45:06 -0600;
05eb4f3 update & fix compiler issue by Xiuwen Zheng <zhengxwen@gmail.com> 2024-02-14 00:45:58 -0600;
77da82b fix -Wformat-security by Xiuwen Zheng <zhengxwen@gmail.com> 2024-01-19 19:21:31 -0600;
9e4c37d tweak help files by Xiuwen Zheng <zhengxwen@gmail.com> 2024-01-03 18:29:35 -0600;
49f1d2b bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:53:18 -0400;
1100124 bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:53:18 -0400;
66c44c0 update seqGDS2BED() by Xiuwen Zheng <zhengxwen@gmail.com> 2023-10-20 22:49:59 -0500;
77739c9 update seqGDS2BED() by Xiuwen Zheng <zhengxwen@gmail.com> 2023-10-16 21:17:39 -0500;
3b889af detect SC_ARRAY by Xiuwen Zheng <zhengxwen@gmail.com> 2023-08-26 15:13:49 -0500;
5ec6431 bug fix by Xiuwen Zheng <zhengxwen@gmail.com> 2023-06-09 01:40:38 -0500;
644f430 (origin/RELEASE_3_17, RELEASE_3_17) bug fix by Xiuwen Zheng <zhengxwen@gmail.com> 2023-06-09 01:36:28 -0500;
918961e bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:26:13 -0400;
b9d29ac bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:26:13 -0400;
9d56922 update NEWS by Xiuwen Zheng <zhengxwen@gmail.com> 2023-04-04 12:10:52 -0500;
f1efe25 more verbose by Xiuwen Zheng <zhengxwen@gmail.com> 2022-12-23 22:37:41 -0600;
32b4bb6 sprintf is deprecated by Xiuwen Zheng <zhengxwen@gmail.com> 2022-11-22 19:17:59 -0600;
6e85e2a bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:08:00 -0400;
37a86c1 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:08:00 -0400;
4ba95fb update seqUnitSubset by Xiuwen Zheng <zhengxwen@gmail.com> 2022-10-25 23:51:57 -0500;
8b018bc update by Xiuwen Zheng <zhengxwen@gmail.com> 2022-09-04 00:42:22 -0500;
7378309 (origin/RELEASE_3_15, RELEASE_3_15) fix by Xiuwen Zheng <zhengxwen@gmail.com> 2022-09-01 04:29:33 -0500;
656d726 fix by Xiuwen Zheng <zhengxwen@gmail.com> 2022-08-28 04:14:15 -0500;
2796c29 update web links by Xiuwen Zheng <zhengxwen@gmail.com> 2022-07-15 23:35:03 -0500;
e1b55d3 enhance seqGDS2BED() by Xiuwen Zheng <zhengxwen@gmail.com> 2022-07-03 00:52:16 -0500;
46167f9 bug fix (multi-allelic) by Xiuwen Zheng <zhengxwen@gmail.com> 2022-07-02 03:00:37 -0500;
c0b3f7d update by Xiuwen Zheng <zhengxwen@gmail.com> 2022-06-25 01:19:56 -0500;
029eb3e minor update and fixes by Xiuwen Zheng <zhengxwen@gmail.com> 2022-06-07 23:31:43 -0500;
940a6f3 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:14:01 +0000;
60bb3de bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:14:01 +0000;
a2180e7 update seqSNP2GDS() by Xiuwen Zheng <zhengxwen@gmail.com> 2022-04-18 17:14:59 -0500;
75ab00a new seqMulticoreSetup() by Xiuwen Zheng <zhengxwen@gmail.com> 2022-04-13 18:53:38 -0500;
6c54d38 bug fix by Xiuwen Zheng <zhengxwen@gmail.com> 2022-04-05 02:20:36 -0500;
67aa73f update: gdsfile could be a filename by Xiuwen Zheng <zhengxwen@gmail.com> 2022-03-29 17:59:31 -0500;
4102245 update NEWS by Xiuwen Zheng <zhengxwen@gmail.com> 2022-03-28 23:14:33 -0500;
f74d09f fix seqGDS2BED() by Xiuwen Zheng <zhengxwen@gmail.com> 2022-03-26 17:31:12 -0500;
942c6fc new functions by Xiuwen Zheng <zhengxwen@gmail.com> 2022-03-07 01:08:34 -0600;
76c9500 new seqUnitCreate() by Xiuwen Zheng <zhengxwen@gmail.com> 2022-03-01 21:32:26 -0600;
dff5acc new functions and fixes by Xiuwen Zheng <zhengxwen@gmail.com> 2022-02-16 18:16:10 -0600;
d7d52da new functions by Xiuwen Zheng <zhengxwen@gmail.com> 2022-02-11 19:47:37 -0600;
2372fc1 sparse matrix in seqGetData() by Xiuwen Zheng <zhengxwen@gmail.com> 2022-01-21 21:12:06 -0600;
173f45e bug fixes by Xiuwen Zheng <zhengxwen@gmail.com> 2022-01-16 17:07:54 -0600;
e266e46 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:07:17 +0000;
b2f6a92 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:07:16 +0000;
e7d5e78 update test by Xiuwen Zheng <zhengxwen@gmail.com> 2021-09-14 17:24:23 -0500;
25d033b bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:58:07 +0000;
8fa3c99 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:58:07 +0000;
cdec7d1 update NEWS by Xiuwen Zheng <zhengxwen@gmail.com> 2021-05-11 01:07:16 -0500;
bed736a update DESCRIPTION by Xiuwen Zheng <zhengxwen@gmail.com> 2021-04-16 22:57:06 -0500;
515f9a4 update by Xiuwen Zheng <zhengxwen@gmail.com> 2021-02-13 18:02:44 -0600;
92de7f7 update by Xiuwen Zheng <zhengxwen@gmail.com> 2021-02-11 17:16:09 -0600;
d6ef135 new seqNewVarData() by Xiuwen Zheng <zhengxwen@gmail.com> 2021-02-02 00:06:24 -0600;
bf11f68 fix seqSetFilter(, ret.idx=T) by Xiuwen Zheng <zhengxwen@gmail.com> 2021-01-26 12:17:13 -0600;
d25aa3a update seqAddValue() by Xiuwen Zheng <zhengxwen@gmail.com> 2021-01-18 21:43:35 -0600;
c1c1140 update seqGetData + seqGDS2VCF by Xiuwen Zheng <zhengxwen@gmail.com> 2021-01-08 21:45:29 -0600;
bc7fc0b update seqAddValue() by Xiuwen Zheng <zhengxwen@gmail.com> 2021-01-06 22:33:47 -0600;
cda59de rewrite seqSetFilterPos() by Xiuwen Zheng <zhengxwen@gmail.com> 2020-12-28 22:31:36 -0600;
16ca7c1 new 'ret.idx' in seqSetFilter() by Xiuwen Zheng <zhengxwen@gmail.com> 2020-12-27 00:33:35 -0600;
50b9149 allow no variant in seqApply() and seqBlockApply() by Xiuwen Zheng <zhengxwen@gmail.com> 2020-12-15 01:46:11 -0600;
6bc8264 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:49:50 -0400;
6a9e919 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:49:50 -0400;
60a381e update seqRecompress.Rd by Xiuwen Zheng <zhengxwen@gmail.com> 2020-09-13 02:18:22 -0500;
bafb4c0 fix something by Xiuwen Zheng <zhengxwen@gmail.com> 2020-07-20 23:46:05 -0500;
0628843 (origin/RELEASE_3_11, RELEASE_3_11) bug fixes by Xiuwen Zheng <zhengxwen@gmail.com> 2020-06-15 16:39:25 -0500;
564d889 seqSetFilter(, action='push+set') by Xiuwen Zheng <zhengxwen@gmail.com> 2020-05-11 15:45:04 -0500;
c3ee400 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:33:45 +0000;
765decf bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:33:45 +0000;
2ba11be update seqSetFilterCond() on DS by Xiuwen Zheng <zhengxwen@gmail.com> 2020-04-26 01:45:36 -0500;
9031adc tweak by Xiuwen Zheng <zhengxwen@gmail.com> 2020-04-22 22:21:34 -0500;
1e182d1 update seqAlleleFreq/Count() by Xiuwen Zheng <zhengxwen@gmail.com> 2020-04-20 00:21:22 -0500;
2c91606 verbose by Xiuwen Zheng <zhengxwen@gmail.com> 2020-04-16 20:28:40 -0500;