| ... | ... |
@@ -56,7 +56,7 @@ setMethod('imgData', 'SVPExperiment', function(x){
|
| 56 | 56 |
return(x) |
| 57 | 57 |
}) |
| 58 | 58 |
|
| 59 |
-#' @rdname SVP-setters |
|
| 59 |
+#' @rdname SVP-accessors |
|
| 60 | 60 |
#' @importFrom S4Vectors isEmpty |
| 61 | 61 |
#' @exportMethod imgData<- |
| 62 | 62 |
setReplaceMethod('imgData', c('SVPExperiment', "DataFrame"), function(x, value){
|
| ... | ... |
@@ -73,7 +73,7 @@ setReplaceMethod('imgData', c('SVPExperiment', "DataFrame"), function(x, value){
|
| 73 | 73 |
return(x) |
| 74 | 74 |
}) |
| 75 | 75 |
|
| 76 |
-#' @rdname SVP-setters |
|
| 76 |
+#' @rdname SVP-accessors |
|
| 77 | 77 |
#' @exportMethod imgData<- |
| 78 | 78 |
setReplaceMethod('imgData', c("SVPExperiment", "NULL"), function(x, value){
|
| 79 | 79 |
flag <- .check_element_obj(x, key='imgData', basefun = int_metadata, namefun = names) |
| ... | ... |
@@ -84,7 +84,7 @@ setReplaceMethod('imgData', c("SVPExperiment", "NULL"), function(x, value){
|
| 84 | 84 |
return(x) |
| 85 | 85 |
}) |
| 86 | 86 |
|
| 87 |
-#' @rdname SVP-setters |
|
| 87 |
+#' @rdname SVP-accessors |
|
| 88 | 88 |
#' @aliases spatialCoords<-,SVPExperiment |
| 89 | 89 |
#' @exportMethod spatialCoords<- |
| 90 | 90 |
setReplaceMethod("spatialCoords", c("SVPExperiment", "matrix_Or_NULL"), function(x, value){
|
| ... | ... |
@@ -112,7 +112,7 @@ setReplaceMethod("spatialCoords", c("SVPExperiment", "matrix_Or_NULL"), function
|
| 112 | 112 |
}) |
| 113 | 113 |
|
| 114 | 114 |
|
| 115 |
-#' @rdname SVP-setters |
|
| 115 |
+#' @rdname SVP-accessors |
|
| 116 | 116 |
#' @importFrom SpatialExperiment spatialCoordsNames<- |
| 117 | 117 |
#' @exportMethod spatialCoordsNames<- |
| 118 | 118 |
setReplaceMethod("spatialCoordsNames", c('SVPExperiment', 'character'),
|
| ... | ... |
@@ -9,6 +9,8 @@ |
| 9 | 9 |
\alias{spatialCoordsNames<-,SVPExperiment,character-method}
|
| 10 | 10 |
\alias{imgData<-,SVPExperiment,DataFrame-method}
|
| 11 | 11 |
\alias{imgData<-,SVPExperiment,NULL-method}
|
| 12 |
+\alias{spatialCoords<-,SVPExperiment,matrix_Or_NULL-method}
|
|
| 13 |
+\alias{spatialCoords<-,SVPExperiment}
|
|
| 12 | 14 |
\title{Some accessor funtions to get the internal slots of SVPExperiment}
|
| 13 | 15 |
\usage{
|
| 14 | 16 |
\S4method{spatialCoords}{SVPExperiment}(x)
|
| ... | ... |
@@ -17,15 +19,23 @@ |
| 17 | 19 |
|
| 18 | 20 |
\S4method{imgData}{SVPExperiment}(x)
|
| 19 | 21 |
|
| 22 |
+\S4method{imgData}{SVPExperiment,DataFrame}(x) <- value
|
|
| 23 |
+ |
|
| 24 |
+\S4method{imgData}{SVPExperiment,NULL}(x) <- value
|
|
| 25 |
+ |
|
| 26 |
+\S4method{spatialCoords}{SVPExperiment,matrix_Or_NULL}(x) <- value
|
|
| 27 |
+ |
|
| 28 |
+\S4method{spatialCoordsNames}{SVPExperiment,character}(x) <- value
|
|
| 29 |
+ |
|
| 20 | 30 |
\S4method{show}{SVPExperiment}(object)
|
| 21 | 31 |
} |
| 22 | 32 |
\arguments{
|
| 23 | 33 |
\item{x}{a \linkS4class{SVPExperiment} class.}
|
| 24 | 34 |
|
| 25 |
-\item{object}{a \linkS4class{SVPExperiment} class.}
|
|
| 26 |
- |
|
| 27 | 35 |
\item{value}{matrix for \code{spatialCoords(object) <- value}
|
| 28 | 36 |
character for \code{spatialCoordsNames(object) <- value}.}
|
| 37 |
+ |
|
| 38 |
+\item{object}{a \linkS4class{SVPExperiment} class.}
|
|
| 29 | 39 |
} |
| 30 | 40 |
\value{
|
| 31 | 41 |
matrix or character or print the information of object |
