Bioconductor Code: ReUseData

Graph of ReUseData

85fc756 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 11:17:22 -0400;
5d8c0ee (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 11:17:22 -0400;
cbe4e73 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:46:52 -0400;
801f620 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:46:52 -0400;
836e03f (origin/RELEASE_3_18, RELEASE_3_18) Merge branch 'devel' into RELEASE_3_18 by Qian Liu <qliu7@buffalo.edu> 2023-12-08 16:02:19 -0500;
d45ef48 add docs by qhu <huqmail@gmail.com> 2023-11-22 22:25:57 -0500;
6082b36 add pkgdown by qhu <huqmail@gmail.com> 2023-11-22 22:22:48 -0500;
5750d69 fix cwltool by qhu <huqmail@gmail.com> 2023-11-22 21:05:40 -0500;
8fddae1 bump version for bioc release by Qian Liu <qliu7@buffalo.edu> 2023-11-14 20:09:39 -0500;
147f416 bump version to bioc devel by Qian Liu <qliu7@buffalo.edu> 2023-11-14 19:57:30 -0500;
30e5008 Merge remote-tracking branch 'upstream/devel' by Qian Liu <qliu7@buffalo.edu> 2023-11-14 19:56:37 -0500;
f27cac5 add install_cwltool to vignette by hubentu <qiang.hu@roswellpark.org> 2023-11-14 17:38:41 -0500;
6f41680 add annData example to vignette; add listNames to toList by hubentu <qiang.hu@roswellpark.org> 2023-11-14 15:44:27 -0500;
ac06bbb add annData for local files. Fix bugs by hubentu <qiang.hu@roswellpark.org> 2023-11-13 16:05:13 -0500;
84142fa bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:46:21 -0400;
4abc363 bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:46:21 -0400;
d07a228 (origin/RELEASE_3_17, RELEASE_3_17) change version back to 1.0.1 for release 3.17 by Qian Liu <qliu7@buffalo.edu> 2023-07-28 12:18:11 -0400;
3650569 Merge branch 'master' into RELEASE_3_17 by Qian Liu <qliu7@buffalo.edu> 2023-07-28 12:16:56 -0400;
d20cd98 Merge branch 'master' into devel by Qian Liu <qliu7@buffalo.edu> 2023-07-28 12:15:42 -0400;
4c3abca Merge branch 'master' of https://github.com/rworkflow/ReUseData by Qian Liu <qliu7@buffalo.edu> 2023-07-28 12:12:20 -0400;
12bb9c7 update data recipes in inst/extdata by Qian Liu <qliu7@buffalo.edu> 2023-07-28 12:11:35 -0400;
3a1df6c bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:42:19 -0400;
3bb82e3 bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:42:19 -0400;
ef32d88 bump version to populate the Rcwl update for cwltools version requirement, trying to fix MacOS building error by Qian Liu <qian.liu@roswellpark.org> 2023-03-07 13:48:48 -0500;
ba457bb fix error in quickstart vignette by Qian Liu <qliu7@buffalo.edu> 2023-03-03 14:40:40 -0500;
8f7a4c1 add bbsoption for not supporting windows, try to address macos building issues by Qian Liu <qliu7@buffalo.edu> 2023-02-27 14:43:10 -0500;
af599d9 try fix upstream building issue by Qian Liu <qliu7@buffalo.edu> 2023-02-09 22:28:03 -0500;
586df0f bump version by Qian Liu <qliu7@buffalo.edu> 2023-02-09 21:58:23 -0500;
54083ac try to fix vignette links by Qian Liu <qliu7@buffalo.edu> 2023-02-09 21:55:09 -0500;
32b961c simple version bump by Qian Liu <qliu7@buffalo.edu> 2023-02-09 15:10:16 -0500;
5e02265 update vignette linking by Qian Liu <qliu7@buffalo.edu> 2023-02-09 15:00:31 -0500;
2dd9d7d remove py_install from getData() when older version of cwltool by Qian Liu <qliu7@buffalo.edu> 2023-02-09 14:32:41 -0500;
a7af72c Merge branch 'master' of git.bioconductor.org:packages/ReUseData by Qian Liu <qliu7@buffalo.edu> 2023-02-03 23:00:52 -0500;
6b7dc40 bump version to trigger build by Qian Liu <qliu7@buffalo.edu> 2023-02-03 22:57:59 -0500;
7b9741a reverse basilisk.utils to basilisk. add on.exit() by Qian Liu <qliu7@buffalo.edu> 2023-02-03 22:48:13 -0500;
9c962c7 reverse basilisk.utils to basilisk. add on.exit() by Qian Liu <qliu7@buffalo.edu> 2023-02-03 22:48:13 -0500;
be560d7 macos building error, 1st try by Qian Liu <qliu7@buffalo.edu> 2023-02-03 16:33:57 -0500;
d2d92a3 replace basiliskStart/Stop() functions with basilisk.utils:(de)activateEnvironment by Qian Liu <qliu7@buffalo.edu> 2023-02-03 16:22:32 -0500;
b635a8b add quick start vignette, fix bioccheck notes by Qian Liu <qliu7@buffalo.edu> 2023-02-03 13:08:49 -0500;
9d0dc0d reverse recipeLoad(return=) argument. by default TRUE to assign a new name by Qian Liu <qliu7@buffalo.edu> 2023-02-03 11:23:29 -0500;
c634161 added 'inst/script' to document 'inst/extdata' by Qian Liu <qliu7@buffalo.edu> 2023-02-03 11:20:34 -0500;
08550d1 fix last error for external link by Qian Liu <qliu7@buffalo.edu> 2023-01-18 17:27:29 -0500;
227d398 run BiocCheck locally to fix issues by Qian Liu <qliu7@buffalo.edu> 2023-01-18 10:06:41 -0500;
b825c11 address reviewer's comments by Qian Liu <qliu7@buffalo.edu> 2023-01-18 00:38:02 -0500;
bc46071 add 'remote' option for users to sync with GitHub repo for recipeUpdate and dataUpdate by Qian Liu <qliu7@buffalo.edu> 2023-01-11 13:02:29 -0500;
3951738 tweaks in vignettes and examples by Qian Liu <qliu7@buffalo.edu> 2023-01-11 11:59:17 -0500;
f098dfe address BiocCheck notes by Qian Liu <qliu7@buffalo.edu> 2023-01-10 14:49:36 -0500;
603a4ad remove/deactivate 'remote' argument to comply with Bioc policies about reference to external platforms by Qian Liu <qliu7@buffalo.edu> 2023-01-10 12:23:36 -0500;
d4e9697 remove 'download.files' hard code from functions by Qian Liu <qliu7@buffalo.edu> 2023-01-10 12:13:10 -0500;
26f7022 add test function for getCloudData by Qian Liu <qliu7@buffalo.edu> 2023-01-09 15:12:04 -0500;
0fd393b add support site watch tag by Qian Liu <qliu7@buffalo.edu> 2023-01-09 14:28:02 -0500;
59d4567 update vignettes/tests to address bioc building errors by Qian Liu <qliu7@buffalo.edu> 2023-01-09 14:05:43 -0500;
9f55ce8 add echo_out recipe for examples/vignette/tests by Qian Liu <qliu7@buffalo.edu> 2023-01-09 13:41:53 -0500;
8513948 fix recipe vignette issue in Bioc building machine by Qian Liu <qliu7@buffalo.edu> 2023-01-09 11:14:00 -0500;
b5b7c32 fix macOS building issue for pkg submission by Qian Liu <qliu7@buffalo.edu> 2023-01-05 09:10:40 -0500;
1d09afb add conda=TRUE for required tools: wget gzip by Qian Liu <qliu7@buffalo.edu> 2023-01-04 15:40:23 -0500;
eb39c9e fix the bioc new pkg building error by Qian Liu <qliu7@buffalo.edu> 2023-01-03 15:23:43 -0500;
3e69525 test bioc upstream build by Qian Liu <qliu7@buffalo.edu> 2023-01-03 14:24:26 -0500;
5adf1c9 Merge branch 'master' of https://github.com/rworkflow/ReUseData by Qian Liu <qliu7@buffalo.edu> 2023-01-03 14:11:00 -0500;
d3731d5 toList now handles gcp data, and supports writing to file by Qian Liu <qliu7@buffalo.edu> 2023-01-03 14:10:30 -0500;
c1a4d6a add parallel for getData by hubentu <qiang.hu@roswellpark.org> 2022-12-22 15:57:28 -0500;
b90b19b fix test errors by hubentu <qiang.hu@roswellpark.org> 2022-12-22 15:10:52 -0500;
ec671a4 force install cwltool if not available in env_Rcwl by hubentu <qiang.hu@roswellpark.org> 2022-12-22 13:07:38 -0500;
49389f9 fix datatag issue in dataUpdate by Qian Liu <qliu7@buffalo.edu> 2022-12-22 11:35:04 -0500;
c859c6c meta do not include tag by Qian Liu <qliu7@buffalo.edu> 2022-12-22 11:05:59 -0500;
c6d610e rename as ensembl_liftover by Qian Liu <qliu7@buffalo.edu> 2022-12-21 10:41:39 -0500;
8a89b12 change annotation date to time by Qian Liu <qliu7@buffalo.edu> 2022-12-20 14:49:53 -0500;
00a8723 rename genome_liftover recipe by Qian Liu <qliu7@buffalo.edu> 2022-12-20 12:36:42 -0500;
1695257 excluding the dataGen.R script when recipeUpdate() by Qian Liu <qliu7@buffalo.edu> 2022-12-20 12:23:13 -0500;
0b258c5 update message for website link by Qian Liu <qliu7@buffalo.edu> 2022-12-20 11:39:19 -0500;
ac20c40 change demo script to gencode transcripts by Qian Liu <qliu7@buffalo.edu> 2022-12-20 11:33:04 -0500;
f60b838 added one argument checkData per meta_data change by Qian Liu <qliu7@buffalo.edu> 2022-12-14 11:06:01 -0500;
c499582 getCloudData can download multiple data files by Qian Liu <qliu7@buffalo.edu> 2022-12-14 11:05:23 -0500;
2e0e54e Merge branch 'master' of https://github.com/rworkflow/ReUseData by Qian Liu <qliu7@buffalo.edu> 2022-12-13 11:14:47 -0500;
cabb4b4 minor tweak in vignette and documentations by Qian Liu <qliu7@buffalo.edu> 2022-12-13 11:13:50 -0500;
589b12a add versio check with basilisk for getData by hubentu <qiang.hu@roswellpark.org> 2022-12-12 20:58:57 -0500;
76a6e5a add checkData argument in meta_data for internal testing purpose by Qian Liu <qliu7@buffalo.edu> 2022-12-12 13:35:37 -0500;
9de6f57 fix getCloudData function by Qian Liu <qliu7@buffalo.edu> 2022-12-09 15:03:37 -0500;
9f5b33a fix spaces for prefix by hubentu <qiang.hu@roswellpark.org> 2022-12-09 12:47:06 -0500;
407f034 update prefix by hubentu <qiang.hu@roswellpark.org> 2022-12-09 12:14:33 -0500;
a60178c fix doc for dataHub and recipeHub by hubentu <qiang.hu@roswellpark.org> 2022-12-09 10:44:38 -0500;
6a59220 use conda instead of docker; fix tests by hubentu <qiang.hu@roswellpark.org> 2022-12-08 14:36:17 -0500;
c9fe8fc remove FIXME tags by Qian Liu <qliu7@buffalo.edu> 2022-12-06 15:40:44 -0500;
c5dc8a6 add test functions by Qian Liu <qliu7@buffalo.edu> 2022-12-06 15:36:37 -0500;
936543b address BiocCheck issues by Qian Liu <qliu7@buffalo.edu> 2022-12-05 17:29:39 -0500;
a0a8373 modify description for submission by Qian Liu <qliu7@buffalo.edu> 2022-12-05 16:53:02 -0500;
d45da75 fix check issues by Qian Liu <qliu7@buffalo.edu> 2022-12-05 16:33:28 -0500;
1864cef update example with simpler data by Qian Liu <qliu7@buffalo.edu> 2022-12-05 15:47:11 -0500;
48d6fbb add import function for setNames by Qian Liu <qliu7@buffalo.edu> 2022-12-05 12:48:15 -0500;
afdb47c add getCloudData() function. export meta_data. by Qian Liu <qliu7@buffalo.edu> 2022-12-05 12:41:02 -0500;
a0f578f update argument name for getData by Qian Liu <qliu7@buffalo.edu> 2022-12-05 12:28:38 -0500;
7a7b11f update vignettes by Qian Liu <qliu7@buffalo.edu> 2022-12-02 18:11:13 -0500;
bca0c84 meta_data(cleanup=T) now remove invalid or older intermediate files by Qian Liu <qliu7@buffalo.edu> 2022-12-02 17:47:41 -0500;
e42cf65 cloud data can be cached and searched by Qian Liu <qliu7@buffalo.edu> 2022-12-02 17:05:41 -0500;
397c3d3 add yml column in dataHub mcols and dataYml() getter function by Qian Liu <qliu7@buffalo.edu> 2022-12-02 13:35:59 -0500;
9cd9309 use date to create unique intermediate file names. remove older intermediate files for same data by Qian Liu <qliu7@buffalo.edu> 2022-12-02 13:27:27 -0500;
a5913b9 update recipe loading message by Qian Liu <qliu7@buffalo.edu> 2022-12-01 15:22:03 -0500;
b22b71e Merge branch 'master' of https://github.com/rworkflow/ReUseData by Qian Liu <qliu7@buffalo.edu> 2022-12-01 13:37:21 -0500;
f320a65 fix check issues by Qian Liu <qliu7@buffalo.edu> 2022-12-01 13:32:59 -0500;
1647efb add condaPackage by hubentu <qiang.hu@roswellpark.org> 2022-11-30 12:36:09 -0500;