1. RSVSim
  2. Graph
Graph of RSVSim
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  • ad6b2ec (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:43:56 -0400;
  • 38de341 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:43:56 -0400;
  • 8366fd9 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:30:03 -0400;
  • ba4e5f2 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:30:03 -0400;
  • edfc0c7 Add pwalign to Suggests by Hervé Pagès <hpages.on.github@gmail.com> 2024-04-23 15:35:06 -0700;
  • 241b6fd bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:52:21 -0400;
  • 3cc9f3d (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:52:21 -0400;
  • 164990f bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:25:09 -0400;
  • b350e89 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:25:08 -0400;
  • d86a39d bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:07:44 -0400;
  • 6fe2d5d (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:07:44 -0400;
  • 1df4f1e bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:13:10 +0000;
  • d483427 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:13:10 +0000;
  • 818db30 Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-21 00:50:37 -0500;
  • 6bc0d1b bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:06:04 +0000;
  • f133a25 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:06:04 +0000;
  • ef7bc62 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:55:06 +0000;
  • 7c52c69 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:55:06 +0000;
  • a1ad904 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:48:38 -0400;
  • cfe4d5f (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:48:38 -0400;
  • ada2883 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:32:32 +0000;
  • 355d478 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:32:32 +0000;
  • 679e4a8 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:36:28 -0400;
  • b036186 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:36 -0400;
  • c91420d bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:19 -0400;
  • 77efbac (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:40 -0400;
  • 050691f Updated e-mail address by Christoph Bartenhagen <cbartenh@cMac.local> 2019-01-22 16:56:00 +0100;
  • 416ef5b bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:31 -0400;
  • 4fee1e9 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:50 -0400;
  • 2c4ae8b bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:39 -0400;
  • 655b74a (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:28 -0400;
  • 7312374 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:40 -0400;
  • a7e267d (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:57 -0400;
  • 161e7a5 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 33e0f14 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • bb73216 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 281a665 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 8705ee8 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • acad2a1 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 6344d58 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 84a4a76 (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 2e6323a Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • f5b44a7 (origin/RELEASE_3_2, RELEASE_3_2) merged r112948 from trunk by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2016-01-27 16:05:36 +0000;
  • e91a9df Bugfixes: Error in random dup generation (more dups than dup-times) and SV adjustment when implementing dups by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2016-01-27 16:02:56 +0000;
  • c478fa5 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • d983f09 Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • bfc10d1 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • c3264a1 Removed bug concerning number of duplications; added feature to set this number for every given duplication by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2015-05-05 16:06:02 +0000;
  • 639a54a refer to makeTxDbFromUCSC() instead of makeTranscriptDbFromUCSC() by Herve Pages <hpages@fhcrc.org> 2015-05-03 19:54:03 +0000;
  • 7f9b0a1 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 34a8921 (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • b96eab7 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 9ac4a0f (origin/RELEASE_3_0, RELEASE_3_0) merged r97106 from trunk by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2014-11-25 14:44:46 +0000;
  • aacbb9e Bugfixing: 1.Loading TDs from masked BSGenome hg19 package. 2.Repeat bias weights messed up when user passes them via parameter by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2014-11-25 11:41:32 +0000;
  • 528ff1b Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • 4c511f8 Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • ccf8041 Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • a65cda2 Fixed Bug: Chromosome parameter for given FASTA file did not work. And using new masked package for hg19. by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2014-09-18 16:16:09 +0000;
  • a9d9a6f Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • da4cbb4 (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • 8e24ee3 First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • 686792e Modify biocViews to remove duplicate biocViews by Sonali Arora <sarora@fhcrc.org> 2014-03-05 00:09:45 +0000;
  • 0624404 modify to new biocViews to DESCRIPTION file by Sonali Arora <sarora@fhcrc.org> 2014-03-04 22:12:21 +0000;
  • 0bc1396 rename inst/doc to vignettes and bump version by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-11-01 20:28:14 +0000;
  • 57af541 (origin/RELEASE_2_13, RELEASE_2_13) merged r82035 from trunk by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-10-23 12:30:26 +0000;
  • 18798e0 Fixed bug in compareSV output by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-10-23 12:20:44 +0000;
  • ef5ec26 bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
  • 978a1a3 Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
  • 143cd56 bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
  • f50c1d2 (origin/RELEASE_2_12, RELEASE_2_12) merged r80028 from trunk by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-09-04 12:21:54 +0000;
  • de468b4 Bugfix of repeat installation directory by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-09-04 12:10:18 +0000;
  • e8ee32b merged -r77316:77317 from trunk by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-06-10 16:52:44 +0000;
  • d842710 Updated DESCRIPTION by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-06-10 16:50:36 +0000;
  • e05933e merged -r77314:77315 from trunk by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-06-10 16:47:43 +0000;
  • e565434 Updated DESCRIPTION by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-06-10 16:45:17 +0000;
  • afa4550 merged -r77312:77313 from trunk by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-06-10 16:44:53 +0000;
  • a4f86d6 Insertion bugfix for breakpoint adjustment by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-06-10 16:39:52 +0000;
  • 57d6dab merged -r75989:75990 from trunk by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-04-24 12:12:23 +0000;
  • 53a628e Bugfix in calculation of breakpoints for NAHR events by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-04-24 12:05:11 +0000;
  • 7176c9c Bugfix in calculation of breakpoints for NAHR events by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-04-24 12:03:51 +0000;
  • 4c1598b Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
  • 2733aa2 Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
  • a67bf3b bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
  • 0ad586e fixed wrong manuals files for weights by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-03-25 18:07:41 +0000;
  • 89837fd fix last typo in example by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-03-22 21:48:25 +0000;
  • c6a5cf5 fix another typo in example by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-03-22 21:43:46 +0000;
  • 7d56b0c fix typo in example by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-03-22 21:30:20 +0000;
  • 30a8a4a More minor changes in breakpoint placement at drawPos by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-03-21 17:23:09 +0000;
  • 6631d78 Minor changes in breakpoint placement at drawPos by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-03-21 15:36:10 +0000;
  • 93b1d76 Modified breakpoint behaviour for NAHR events by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-03-20 18:27:42 +0000;
  • 2d182b9 Removed warning about RData compression and notes about global binding by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-03-06 11:18:34 +0000;
  • 837439a Added some data and manuals by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-03-04 16:29:41 +0000;
  • ba9681f Added new feature: Bias for repeat regions and SV mechanisms by Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de> 2013-03-04 16:28:27 +0000;
  • cd6e171 Adds GraphPAC iBMQ RSVSim and rTANDEM to the repos. by Marc Carlson <mcarlson@fhcrc.org> 2012-12-15 00:31:05 +0000;