# RNAmodR.AlkAnilineSeq [](https://travis-ci.com/FelixErnst/RNAmodR.AlkAnilineSeq) [](https://codecov.io/gh/FelixErnst/RNAmodR.AlkAnilineSeq)
`RNAmodR.AlkAnilineSeq` uses classes and workflows from `RNAmodR` to detect
`m7G`, `m3C` and `D` in RNASeq data specifically treated according to the
AlkAnilineSeq protocol.
The vignette from the `RNAmodR.AlkAnilineSeq` package provides details on the
specific analysis of AlkAnilineSeq data. Have a look at the vignette from the
`RNAmodR` package for a general description on the provided workflows.
# Installation
The current version of the RNAmodR.AlkAnilineSeq package is available from
Bioconductor.
```
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RNAmodR.AlkAnilineSeq")
library(RNAmodR.AlkAnilineSeq)
```
# Literature
- Marchand, Virginie, Lilia Ayadi, __Felix G. M. Ernst__, Jasmin Hertler,
Valérie Bourguignon-Igel, Adeline Galvanin, Annika Kotter, Mark Helm,
__Denis L. J. Lafontaine__, and Yuri Motorin. 2018. “AlkAniline-Seq: Profiling
of m7G and m3C Rna Modifications at Single Nucleotide Resolution.” Angewandte
Chemie International Edition 57 (51): 16785–90.
https://doi.org/10.1002/anie.201810946.
