1. REDseq
  2. Graph
Graph of REDseq
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  • c53b524 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:37:09 -0400;
  • 57b35f3 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:37:09 -0400;
  • 6192333 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:24:31 -0400;
  • 22e9124 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:24:31 -0400;
  • 8a499f7 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:46:52 -0400;
  • 883d05f (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:46:52 -0400;
  • ba84f00 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:19:52 -0400;
  • 4a4b132 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:19:52 -0400;
  • 8569e52 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:05:56 -0400;
  • 647d21d (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:05:56 -0400;
  • bb2786d bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:07:54 +0000;
  • fd21558 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:07:54 +0000;
  • 3fa1370 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:59:14 +0000;
  • a5a0e6d (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:59:14 +0000;
  • 515e072 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:48:43 +0000;
  • 4c3b25a (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:48:43 +0000;
  • 308f67f bump up the version by Julie Zhu <julie.zhu@umassmed.edu> 2021-05-02 22:15:44 -0400;
  • 7308eb0 BED file is 0 based by Julie Zhu <julie.zhu@umassmed.edu> 2021-03-10 15:42:41 -0500;
  • 37b977e bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:41:39 -0400;
  • 89a4802 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:41:39 -0400;
  • 81b52d7 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:25:44 +0000;
  • 41dd020 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:25:44 +0000;
  • ef871e6 use GRanges instead of RangedData by Julie Zhu <zhul2@lrb6613ml62509.fios-router.home> 2019-12-12 17:07:05 -0500;
  • 49143e3 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:35:33 -0400;
  • 7af0556 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:20 -0400;
  • b0afcd2 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:03 -0400;
  • 901a101 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:26 -0400;
  • b5e415a bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:29 -0400;
  • 6278804 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:47 -0400;
  • 8bd341e bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:38 -0400;
  • d06d746 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:18 -0400;
  • 31dddc9 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:12 -0400;
  • 49dc861 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:34 -0400;
  • c22dc3f bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 4c84aa8 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 5536dd6 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 5d5eca9 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • d8d5b5b (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • ae2c73e bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • bced2af bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 63e12e3 (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 81bdadd Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 84f7908 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 11498d8 (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 4e8c63c Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • deba465 (origin/RELEASE_3_1, RELEASE_3_1) Added citation by Lihua Julie Zhu <julie.zhu@umassmed.edu> 2015-04-22 20:13:14 +0000;
  • 4fdce54 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 973b184 Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • 72d3c7e Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 7f66d5f don't use deprecated IntervalTree by Herve Pages <hpages@fhcrc.org> 2015-04-13 07:45:24 +0000;
  • a6e5bdb Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • 27a7848 (origin/RELEASE_3_0, RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • 9e35fd4 Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • 556caac Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • a53693c (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • a8f309e First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • 654c4b2 changed inst/doc to vignettes by Lihua Julie Zhu <julie.zhu@umassmed.edu> 2013-10-21 15:43:23 +0000;
  • 9235c6d bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
  • 85365cb (origin/RELEASE_2_13, RELEASE_2_13) Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
  • 39f9a2a bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
  • 3bc4498 Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
  • c7e4779 (origin/RELEASE_2_12, RELEASE_2_12) Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
  • c7bf0ea bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
  • eccc217 bump package versions after creating 2.11 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:43:56 +0000;
  • 20fdc6e (origin/RELEASE_2_11, RELEASE_2_11) Creating branch for BioC 2.11 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:37:11 +0000;
  • 66c8fbc Bump all packages before creating 2.11 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:16:24 +0000;
  • 912a7b0 replaced defunct read.DNAStringSet with readDNAStringSet on May 23rd 2012 by Lihua Julie Zhu <julie.zhu@umassmed.edu> 2012-05-23 18:07:40 +0000;
  • f670107 fixed bug in NAMESPACE on May 20 2012 by Lihua Julie Zhu <julie.zhu@umassmed.edu> 2012-05-20 15:40:27 +0000;
  • 513a1fd use readDNAStringSet instead of deprecated read.DNAStringSet on May 17 2012 by Lihua Julie Zhu <julie.zhu@umassmed.edu> 2012-05-17 14:18:59 +0000;
  • ad3f2c1 replace defunct matchMatrix with as.matrix on May 14 2012 by Lihua Julie Zhu <julie.zhu@umassmed.edu> 2012-05-14 14:25:50 +0000;
  • af21b79 bumped version numbers after creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:15:56 +0000;
  • 7b59f38 (origin/RELEASE_2_10, RELEASE_2_10) Creating branch for BioC 2.10 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:10:45 +0000;
  • d2ac405 first version bump prior to creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:05:02 +0000;
  • d5f0a77 modified the file format of cut frequency for mm9 by Lihua Julie Zhu <julie.zhu@umassmed.edu> 2012-03-08 03:52:23 +0000;
  • fbe3a79 added TSS1kbCutFreqAndVariance_mm9.xls by Lihua Julie Zhu <julie.zhu@umassmed.edu> 2012-03-08 03:47:11 +0000;
  • 30ca1c0 added cut frequency summary for hg19 TSS 1kb and cut pattern for allrestriction enzymes by Lihua Julie Zhu <julie.zhu@umassmed.edu> 2012-03-07 01:32:44 +0000;
  • 2b9c330 Import needed stuff from the BiocGenerics package. by Herve Pages <hpages@fhcrc.org> 2011-11-16 01:09:57 +0000;
  • 6018b17 Modified documentation for buildREmap on Nov 8th 2011 by Lihua Julie Zhu <julie.zhu@umassmed.edu> 2011-11-08 19:58:24 +0000;
  • 8610f0d version bump for start of 2.10 development cycle by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:12:28 +0000;
  • 9c0ae16 (origin/RELEASE_2_9, RELEASE_2_9) Creating branch for BioC 2.9 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:05:58 +0000;
  • 567d308 bumped package version numbers prior to creating 2.9 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 22:59:03 +0000;
  • ef7e3ea minor code clean-up by Martin Morgan <mtmorgan@fhcrc.org> 2011-09-27 22:35:23 +0000;
  • 49c1ae4 Modify outfile name if exists already 07-12-11 by Lihua Julie Zhu <julie.zhu@umassmed.edu> 2011-07-12 20:28:55 +0000;
  • 5295c03 Added Tom 07-10-2011 by Lihua Julie Zhu <julie.zhu@umassmed.edu> 2011-07-10 21:34:51 +0000;
  • cd23333 modified compareREDseq to handle NA in adjustedPvalue and col2vscol1 07-01-2011 by Lihua Julie Zhu <julie.zhu@umassmed.edu> 2011-07-01 19:06:36 +0000;
  • 8f9227f added patternID check in searchPattern 06-07-2011 by Lihua Julie Zhu <julie.zhu@umassmed.edu> 2011-06-07 14:54:25 +0000;
  • 95c2179 Added the REDseq package to the repository. by Chao-Jen Wong <cwon2@fhcrc.org> 2011-06-02 22:36:08 +0000;