[](https://github.com/edyp-lab/Pirat/actions/workflows/check_Bioc.yml)
[](https://github.com/edyp-lab/Pirat/actions/workflows/check-bioc.yml)
# Pirat
## Installation
To install this package from Github:
```
install.packages('BiocManager')
BiocManager::install('edyp-lab/Pirat', version = 'devel')
```
## Test
```
library(Pirat)
data(subbouyssie)
my_pipeline_llkimpute(subbouyssie)
data(subropers)
nsamples = nrow(subropers$peptides_ab)
my_pipeline_llkimpute(subropers,
extension = "T",
rna.cond.mask = 1:nsamples,
pep.cond.mask = 1:nsamples,
max.pg.size.pirat.t = 1)
```
Note:
If you run the imputation function `my_pipeline_llkimpute()` for the first time after
the installation of the package, Pirat will automatically install the Python
environment needed to process imputation computations. This function takes a long time to execute
but need to be run only once.
