# Pirat ## Installation To install this package from Github: ``` install.packages('remotes') remotes::install_github('prostarproteomics/Pirat') ``` Once the package has been downloaded, it is necessary to install a Python environment with specific versions of Python libraries. This is the purpose of the function `install_Pirat_env()`. This function takes a long time to execute and need to be run only once. ``` library(Pirat) install_Pirat_env() ``` ## Test ``` data(subbouyssie) my_pipeline_llkimpute(subbouyssie) data(subropers) nsamples = nrow(subropers$peptides_ab) my_pipeline_llkimpute(subropers, extension = "T", rna.cond.mask = 1:nsamples, pep.cond.mask = 1:nsamples, max.pg.size.pirat.t = 1) ```