1. MSnID
  2. Graph
Graph of MSnID
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  • dc343c5 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:54:51 -0400;
  • 8588a13 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:54:51 -0400;
  • 2286916 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:38:55 -0400;
  • 746047d (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:38:55 -0400;
  • 5de1b6e bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:38:36 -0400;
  • 605438e (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:38:36 -0400;
  • 62547bc bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:34:42 -0400;
  • 587f568 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:34:42 -0400;
  • 981bf32 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:10:19 -0400;
  • d641e00 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:10:19 -0400;
  • 81a49c2 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:21:36 +0000;
  • a4e5857 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:21:36 +0000;
  • 421aa9e bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:16:01 +0000;
  • 0e6de89 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:16:01 +0000;
  • 4abf729 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:07:42 +0000;
  • 542b32c (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:07:42 +0000;
  • 774fbea bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:59:05 -0400;
  • f0cef77 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:59:05 -0400;
  • cc337cf version bump by Vlad Petyuk <petyuk@gmail.com> 2020-10-16 11:18:33 -0700;
  • dd5927d catch-up with mzR update of peptide reference by Vlad Petyuk <petyuk@gmail.com> 2020-10-16 11:09:48 -0700;
  • c90e2b9 minor version update by Vlad Petyuk <petyuk@gmail.com> 2020-10-11 13:57:43 -0700;
  • d03098e version update by Vlad Petyuk <petyuk@gmail.com> 2020-10-11 13:44:44 -0700;
  • 94dcf73 catch up with mzR update (getModInfo) by Vlad Petyuk <petyuk@gmail.com> 2020-10-11 13:36:44 -0700;
  • 86eefb1 make sure NA accessions don't make through by Vlad Petyuk <petyuk@gmail.com> 2020-08-06 22:32:28 -0700;
  • b89d150 switch to safer ID pattern extraction by Vlad Petyuk <petyuk@gmail.com> 2020-08-05 20:23:11 -0700;
  • b1cd2ba completed vignette on PTM handling by Vlad Petyuk <petyuk@gmail.com> 2020-08-04 18:42:15 -0700;
  • d8b7bc8 small fixed in couple of methods by Vlad Petyuk <petyuk@gmail.com> 2020-08-04 18:41:49 -0700;
  • 2dee1af Merge pull request <a href="#11">#11</a> from mdnestor/dev by Vlad Petyuk <petyuk@gmail.com> 2020-08-04 14:51:13 -0700;
  • ddda1ac add peptide_ref to read_mzIDs by Michael Nestor <michael.nestor@pnnl.gov> 2020-07-28 14:33:03 -0700;
  • 767e33c new remap_accessions method by Vlad Petyuk <petyuk@gmail.com> 2020-07-27 10:45:02 -0700;
  • dc3185d fixes in remap_fasta_entry_names by Vlad Petyuk <petyuk@gmail.com> 2020-07-27 10:44:22 -0700;
  • 0a82b8a adding remaping fasta entry names function by Vlad Petyuk <petyuk@gmail.com> 2020-07-24 13:22:40 -0700;
  • 56cb489 S4 method signature fix in documentation by Vlad Petyuk <petyuk@gmail.com> 2020-07-24 10:44:57 -0700;
  • cdd0093 catch-up on fetch_conversion_table imports/exports by Vlad Petyuk <petyuk@gmail.com> 2020-07-24 10:44:35 -0700;
  • 5782c77 addition of fetch_conversion_table function by Vlad Petyuk <petyuk@gmail.com> 2020-07-24 10:43:51 -0700;
  • 5f6d4ea fix eol by Vlad Petyuk <petyuk@gmail.com> 2020-07-21 17:11:15 -0700;
  • 38e49cc improved vignette for PTM workflow by Vlad Petyuk <petyuk@gmail.com> 2020-07-21 17:11:04 -0700;
  • 0547204 fixed shift when there are no prior modification were mapped by Vlad Petyuk <petyuk@gmail.com> 2020-07-17 23:00:14 -0700;
  • d0453d9 lots of documentation fixes by Vlad Petyuk <petyuk@gmail.com> 2020-07-17 00:33:28 -0700;
  • bc3740b revisited inference method. incorporated "prior" argument. by Vlad Petyuk <petyuk@gmail.com> 2020-07-14 17:00:01 -0700;
  • d15abab just the eol by Vlad Petyuk <petyuk@gmail.com> 2020-07-13 23:15:46 -0700;
  • f674ded draft PTM vignette by Vlad Petyuk <petyuk@gmail.com> 2020-07-13 23:11:52 -0700;
  • d01c817 key PTM handling methods by Vlad Petyuk <petyuk@gmail.com> 2020-07-13 22:58:22 -0700;
  • 9d9aa6f small fasta file for demontrating PTM mapping capabilities by Vlad Petyuk <petyuk@gmail.com> 2020-07-13 22:57:35 -0700;
  • ae14c15 minor detail in example. specification of example data by Vlad Petyuk <petyuk@gmail.com> 2020-07-13 16:01:43 -0700;
  • 337c9d4 Merge pull request <a href="#9">#9</a> from vladpetyuk/revert-8-master by Vlad Petyuk <petyuk@gmail.com> 2020-07-13 14:44:58 -0700;
  • c9a3b17 Revert "Add argument to enable prioritized inference" by Vlad Petyuk <petyuk@gmail.com> 2020-07-13 14:44:40 -0700;
  • 71dab24 Merge pull request <a href="#8">#8</a> from JMoon1/master by Vlad Petyuk <petyuk@gmail.com> 2020-07-13 14:29:52 -0700;
  • 766f68a Add argument to enable prioritized inference by JMoon1 <jmoon1194@gmail.com> 2020-07-10 11:34:44 -0700;
  • cf8e3cf increased the stringency of package dependency by Vlad Petyuk <petyuk@gmail.com> 2020-06-04 12:10:22 -0700;
  • 65aca1a bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:43:17 +0000;
  • 56cf547 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:43:17 +0000;
  • 5fd608f test phospho dataset by Petyuk <d3m629@we33801.pnl.gov> 2020-01-15 14:11:13 -0800;
  • 155b04a bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:38:07 -0400;
  • ad1f290 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:09:04 -0400;
  • 92820d0 catching up with bioconductur version by Vlad Petyuk <vladislav.petyuk@pnnl.gov> 2019-07-05 17:08:54 -0700;
  • d328143 (origin/RELEASE_3_9, RELEASE_3_9) Merge remote-tracking branch 'upstream/master' by Vlad Petyuk <petyuk@gmail.com> 2019-07-03 00:08:09 -0700;
  • 2f8986f version catch-up by Vlad Petyuk <petyuk@gmail.com> 2019-07-02 19:32:51 -0700;
  • 575e584 follow-up fixes and unit test by Vlad Petyuk <petyuk@gmail.com> 2019-07-01 20:56:20 -0700;
  • 53ed356 follow-up by Vlad Petyuk <petyuk@gmail.com> 2019-07-01 18:23:58 -0700;
  • e7068d0 inference can handle unique and razor options now by Vlad Petyuk <petyuk@gmail.com> 2019-07-01 18:19:51 -0700;
  • f0f0d23 handling razor peptides by Vlad Petyuk <petyuk@gmail.com> 2019-07-01 15:23:45 -0700;
  • 3071ba4 follow-up by Vlad Petyuk <petyuk@gmail.com> 2019-07-01 15:04:53 -0700;
  • e733b86 ensuring alphanumeric order in parsimony inference by Vlad Petyuk <petyuk@gmail.com> 2019-07-01 15:01:46 -0700;
  • 67777f8 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:45 -0400;
  • ae18960 bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:49 -0400;
  • cc10070 Merge remote-tracking branch 'origin/master' into devel by Vlad Petyuk <petyuk@gmail.com> 2018-11-30 12:18:11 -0800;
  • 539deb8 catch up by Vlad Petyuk <petyuk@gmail.com> 2018-11-30 11:28:26 -0800;
  • 98a3641 (origin/RELEASE_3_8, RELEASE_3_8) version bump by Vlad Petyuk <petyuk@gmail.com> 2018-11-30 11:22:23 -0800;
  • 4589e1f ImmunoOncology by Vlad Petyuk <petyuk@gmail.com> 2018-11-30 11:15:41 -0800;
  • 24e561a mess with versions by Vlad Petyuk <petyuk@gmail.com> 2018-11-30 10:51:50 -0800;
  • ddfd3c4 mess with versions by Vlad Petyuk <petyuk@gmail.com> 2018-11-30 10:51:40 -0800;
  • c0285bd mess by Vlad Petyuk <petyuk@gmail.com> 2018-11-30 10:51:07 -0800;
  • edf53f6 version update by Vlad Petyuk <petyuk@gmail.com> 2018-11-30 10:44:11 -0800;
  • 8a6bc68 Merge branch 'master' into devel by Vlad Petyuk <petyuk@gmail.com> 2018-11-30 10:22:36 -0800;
  • 4117bad adding ImmunoOncology to the scope by Vlad Petyuk <petyuk@gmail.com> 2018-11-30 10:15:41 -0800;
  • e55e79f bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:33 -0400;
  • 1a3f00a bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:55 -0400;
  • a514457 catching up with version and description of a problem fix by Vlad Petyuk <petyuk@gmail.com> 2018-10-10 14:27:57 -0700;
  • a436bf9 Updating hash corresponding to msnid3 object. This is a result of adding scan numbers. by Vlad Petyuk <petyuk@gmail.com> 2018-10-10 14:20:49 -0700;
  • 621c214 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:40 -0400;
  • f69b41d (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:34 -0400;
  • a8822b3 (origin/RELEASE_3_6, RELEASE_3_6) version update to trigger rebuild by Vlad Petyuk <petyuk@gmail.com> 2017-11-24 10:47:56 -0800;
  • eb4017f fix of hashing issue by Vlad Petyuk <petyuk@gmail.com> 2017-11-22 20:51:59 -0800;
  • 1e5998b Merge remote-tracking branch 'upstream/master' by Vlad Petyuk <petyuk@gmail.com> 2017-11-22 00:04:39 -0800;
  • 26c1800 Testing hash just for protein list. This avoids throwing the test away by the differences in the last digits on doubles. by Vlad Petyuk <petyuk@gmail.com> 2017-11-21 23:52:04 -0800;
  • 167b289 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:53:40 -0400;
  • cda036a bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:40:37 -0400;
  • 53ba50f cleaning leftover mess after merging conflicts by Vlad Petyuk <petyuk@gmail.com> 2017-10-15 10:03:37 -0700;
  • e6511e1 (origin/RELEASE_3_5, RELEASE_3_5) added imports from parallel by Vlad Petyuk <petyuk@gmail.com> 2017-10-14 09:47:54 -0700;
  • e9a20db fix error related to OpenMPI by Vlad Petyuk <petyuk@gmail.com> 2017-10-12 10:48:55 -0700;
  • 482726e resolving conflicts after merging with upstream Bioconductor's repo by Vlad Petyuk <petyuk@gmail.com> 2017-10-12 10:35:41 -0700;
  • c6bc31c version bump by Vlad Petyuk <petyuk@gmail.com> 2017-10-05 12:08:05 -0700;
  • 11fb6b3 end of line formatting problem by Vlad Petyuk <petyuk@gmail.com> 2017-10-05 12:07:56 -0700;
  • 4dec45d switch from mclapply to parLapply by Vlad Petyuk <petyuk@gmail.com> 2017-10-05 11:56:01 -0700;
  • 2fb4e79 robustifying apply_filter for NSE. see https://github.com/vladpetyuk/MSnID/issues/5 by Vlad Petyuk <petyuk@gmail.com> 2017-04-24 13:15:16 -0700;
  • 876cf2e bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 50c8b70 Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 74b2b20 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • b10409f improved unit test for checking protein/accession inference by Vlad Petyuk <petyuk@gmail.com> 2017-04-24 10:58:15 -0700;