1. MLSeq
  2. Graph
Graph of MLSeq
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  • 97e5509 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:50:40 -0400;
  • c5fc14f (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:50:40 -0400;
  • 695f40c bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:35:29 -0400;
  • f89a68a (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:35:29 -0400;
  • 3d96262 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:57:54 -0400;
  • d41d6a4 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:57:54 -0400;
  • 5270ef7 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:30:52 -0400;
  • d03ff50 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:30:52 -0400;
  • a064923 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:09:20 -0400;
  • 42c5e33 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:09:20 -0400;
  • e9bf6c8 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:18:14 +0000;
  • 3add161 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:18:14 +0000;
  • a4d0307 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:12:21 +0000;
  • be20d3a (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:12:21 +0000;
  • e0cd2ac Fixed build errors originated from '&&' and '||' type logical expressions. Reconstructed the vignette file. by Dincer GOKSULUK (Lenovo) <dincer.goksuluk@gmail.com> 2021-08-14 15:43:12 +0300;
  • e176296 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:03:34 +0000;
  • 2d28c92 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:03:34 +0000;
  • bfb22fa bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:55:23 -0400;
  • 1b39bbe (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:55:23 -0400;
  • a5b8558 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:39:06 +0000;
  • 56659ee (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:39:06 +0000;
  • 046e48a bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:37:19 -0400;
  • ddade0c (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:53 -0400;
  • aa3088b (origin/RELEASE_3_9, RELEASE_3_9) Development branch pushed to release branch. Version bumped to 2.2.1 in release branch. by Dinçer GÖKSÜLÜK <dincer.goksuluk@gmail.com> 2019-05-04 10:05:56 +0300;
  • 49a9e09 Minor bug fixes and improvements. Version bumped to 2.3.1 in development brach. by Dinçer GÖKSÜLÜK <dincer.goksuluk@gmail.com> 2019-05-04 09:54:51 +0300;
  • 82bc7af Merge commit '299b4a838bc86c6bef840916f3dc454aceb62de2' by Dinçer GÖKSÜLÜK <dincer.goksuluk@gmail.com> 2019-05-03 22:57:37 +0300;
  • 299b4a8 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:31 -0400;
  • 5fe712a bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:47 -0400;
  • 2b99386 (origin/RELEASE_3_8, RELEASE_3_8) Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:15:37 -0500;
  • 9828f3b Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:15:34 -0500;
  • ed615ed bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:32 -0400;
  • 45a9624 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:53 -0400;
  • fe62b4a replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:52:32 -0400;
  • 5cc25a1 new unit tests included. by Dinçer GÖKSÜLÜK <dincer.goksuluk@gmail.com> 2018-06-29 18:18:12 +0300;
  • 5d3aa7e Import fields for vignette is included in NAMESPACE. by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-06-09 01:20:37 +0300;
  • e32e56d (origin/RELEASE_3_7, RELEASE_3_7) Bump x.y.z versions to even 'y' prior to merging development into RELEASE_3_7. by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-06-07 10:51:44 +0300;
  • 256fce2 Merge development into RELEASE_3_7. by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-06-07 10:49:35 +0300;
  • b4d6fc8 Resolve conflicts on 'DESCRIPTION'. by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-06-07 10:48:19 +0300;
  • 6370325 Adds package startup message. Minor changes in package vignette. by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-06-07 10:42:06 +0300;
  • bd1e5ca Release version bumped to 1.20.2 by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-06-05 22:07:23 +0300;
  • e9ae1f5 Merge branch 'master' into RELEASE_3_7 by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-06-05 22:04:40 +0300;
  • 628473f Bibliography error fixed for vignette. by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-06-05 21:39:48 +0300;
  • 147aff6 Bibliography error fixed for vignette. by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-06-05 21:39:48 +0300;
  • 9b68efb Updated vignette. by Dinçer GÖKSÜLÜK <dincer.goksuluk@gmail.com> 2018-06-05 18:33:21 +0300;
  • 455d809 RELEASE_3_7 version moved to 1.20.1 by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-06-04 18:14:20 +0300;
  • 5d188c3 Updated rd file of 'discreteControl' function. by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-06-04 18:03:14 +0300;
  • 0ee4774 Updated vignette. by Dinçer GÖKSÜLÜK <dincer.goksuluk@gmail.com> 2018-06-04 17:51:01 +0300;
  • cc813bf Vignette files added. Version moved to 1.99.6 by Dinçer GÖKSÜLÜK <dincer.goksuluk@gmail.com> 2018-06-04 14:56:30 +0300;
  • 5299216 Fixing cross-reference to DESeq2 S4 classes (Warnings from Windows Server check results). Version is set to 1.99.5 by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-05-23 00:15:00 +0300;
  • 3e6fac8 Developement version moved to 1.99.4 by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-05-22 10:22:04 +0300;
  • da07273 Unsupported folders for package building are ignored in .Rbuildignore by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-05-21 15:40:23 +0300;
  • 7a34c81 removed all and added with git ignore (revised) by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-05-21 15:26:15 +0300;
  • 610098d removed all and added with git ignore by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-05-21 15:09:41 +0300;
  • 2d709b0 Warnings (cross-referencing to other packages) from Windows Server check is fixed. Version is set to 1.99.3 by Dinçer GÖKSÜLÜK <dincer.goksuluk@gmail.com> 2018-05-21 11:59:45 +0300;
  • b599876 DESCRIPTION is modified to remove warnings from imported packages. Version is set to 1.99.2 by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-05-19 22:09:38 +0300;
  • 164c8c1 Generic functions are debugged and version moved to 1.99.3. by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-05-19 15:06:18 +0300;
  • 63a99f1 Updated build ignore list. by Dincer GOKSULUK <dincer.goksuluk@gmail.com> 2018-05-19 13:23:57 +0300;
  • dd9ae8b version moved to 1.99.2 by Dinçer GÖKSÜLÜK <dincer.goksuluk@gmail.com> 2018-05-18 16:58:00 +0300;
  • da55e2a gitignore & buildignore added. by Dinçer GÖKSÜLÜK <dincer.goksuluk@gmail.com> 2018-05-18 16:57:29 +0300;
  • 210d939 Version numbering is fixed. by Dinçer GÖKSÜLÜK <dincer.goksuluk@gmail.com> 2018-05-18 16:23:32 +0300;
  • 743a30d NEWS & README added. by Dinçer GÖKSÜLÜK <dincer.goksuluk@gmail.com> 2018-05-18 16:13:32 +0300;
  • 285db4d Major Changes in MLSeq, version moved to 2.x.y from 1.x.y by Dinçer GÖKSÜLÜK <dincer.goksuluk@gmail.com> 2018-05-18 15:09:43 +0300;
  • ff3e4a8 Remove author from description. by Dinçer GÖKSÜLÜK <dincer.goksuluk@gmail.com> 2018-05-18 15:06:23 +0300;
  • 375a0b3 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:40 -0400;
  • 611ffef bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:32 -0400;
  • e8e94eb bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:53:04 -0400;
  • d8c56fa (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:40:12 -0400;
  • 9a89acf (origin/RELEASE_3_5, RELEASE_3_5) Remove build/ folder (does not belong to the package source tree and breaks 'R CMD INSTALL' under certain circumstances). by Hervé Pagès <hpages@fredhutch.org> 2017-10-08 14:55:19 -0700;
  • 5643700 Remove build/ folder (does not belong to the package source tree and breaks 'R CMD INSTALL' under certain circumstances). by Hervé Pagès <hpages@fredhutch.org> 2017-10-08 14:55:19 -0700;
  • 85b5d5a bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 8f8749f Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 01319da bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 64fd9aa devel version moved to 1.15.2 by Gokmen Zararsiz <gokmenzararsiz@erciyes.edu.tr> 2016-12-01 09:48:55 +0000;
  • 7ad1b1d Revert "Revert "vignette is updated - minor fixes"" by Gokmen Zararsiz <gokmenzararsiz@erciyes.edu.tr> 2016-12-01 09:48:48 +0000;
  • 2d58159 Revert "vignette is updated - minor fixes" by Gokmen Zararsiz <gokmenzararsiz@erciyes.edu.tr> 2016-12-01 09:48:35 +0000;
  • c53cc73 vignette is updated - minor fixes by Gokmen Zararsiz <gokmenzararsiz@erciyes.edu.tr> 2016-12-01 09:48:22 +0000;
  • 634aba7 (origin/RELEASE_3_4, RELEASE_3_4) namespace fixed by Gokmen Zararsiz <gokmenzararsiz@erciyes.edu.tr> 2016-11-30 08:28:57 +0000;
  • 503fb32 namespace error fixed. by Gokmen Zararsiz <gokmenzararsiz@erciyes.edu.tr> 2016-11-25 07:48:48 +0000;
  • 2bfe840 typo correction by Gokmen Zararsiz <gokmenzararsiz@erciyes.edu.tr> 2016-11-25 07:11:15 +0000;
  • f1e3f3e devel version moved to 1.17 by Gokmen Zararsiz <gokmenzararsiz@erciyes.edu.tr> 2016-11-25 07:06:04 +0000;
  • 51591de version moved to 1.16.0 by Gokmen Zararsiz <gokmenzararsiz@erciyes.edu.tr> 2016-11-24 18:34:30 +0000;
  • d8bc3d9 bug fixes for namespace error by Gokmen Zararsiz <gokmenzararsiz@erciyes.edu.tr> 2016-11-24 17:46:36 +0000;
  • deb3325 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • e7611c7 Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 8712ea2 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 89f32e8 (origin/RELEASE_3_3, RELEASE_3_3) Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:18:19 +0000;
  • 930ddf7 Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:14:22 +0000;
  • a5b5977 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:15:25 +0000;
  • 23064db Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:05:31 +0000;
  • 4b35b2e bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 5b6610c Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 3bb0b7f Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 91278de (origin/RELEASE_3_2, RELEASE_3_2) backport fixes from devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-03-09 21:37:39 +0000;
  • 8347e93 updates from author by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-03-09 21:19:56 +0000;
  • 7e23b70 adding citation for deseq2 by Gokmen Zararsiz <gokmenzararsiz@erciyes.edu.tr> 2015-11-14 21:00:22 +0000;
  • f1b405d Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 9c4b55b Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 08f48c6 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 384b92c Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 2cf27a4 (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;