Name Mode Size
R 040000
data 040000
inst 040000
man 040000
src 040000
tests 040000
vignettes 040000
.Rbuildignore 100644 0 kb
.gitignore 100644 1 kb
DESCRIPTION 100644 2 kb
LICENSE 100644 0 kb
NAMESPACE 100644 2 kb
NEWS 100644 9 kb 100644 1 kb
# DepecheR is now on Bioconductor! Please go to to get access to vinjettes, and to install the latest release or development versions. DepecheR is an R package for clustering cytometry and single-cell RNA sequencing data according to a minimal set of biological markers. This is done using repeated application of a penalized k-means algorithm, which penalizes partitions that depend on a large number of markers. DepecheR tunes the level of penalization by testing a range of penalization levels, thus minimizing the need for assumptions and arbitrary decisions. DepecheR however also contains a function suite for statistical interpretation of group differences, and for visualization of said group differences, in addition to population densities, marker expressions, et cetera.