# DEGreport
<img src="https://raw.githubusercontent.com/lpantano/DEGreport/main/inst/sticker/degreport.png" width="150" height="150" align="right"/>
[](https://travis-ci.org/lpantano/DEGreport)
[](http://www.repostatus.org/#active)
[](http://bioconductor.org/packages/3.6/bioc/html/DEGreport.html)
[](https://codecov.io/github/lpantano/DEGreport?branch=master)
[](https://platform.batchx.io/lpantano-team/tools/degreport%2Fdeg-patterns "Support this project by running your production jobs at BatchX")
QCs, figures and analyses after differential expression with DESeq2 or other similar tool.
Pantano L (2017). DEGreport: Report of DEG analysis. R package version 1.13.8.
DOI: [10.18129/B9.bioc.DEGreport](https://doi.org/doi:10.18129/B9.bioc.DEGreport)
## Installation
This is an [R][] package.
### [Bioconductor][] stable version
```r
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("DEGreport")
```
### [Bioconductor][] latest version
```r
devtools::install_git("https://git@git.bioconductor.org/packages/DEGreport")
```
### [devtools][] unstable version
```r
install.packages("devtools")
devtools::install_github("lpantano/DEGreport")
```
Load the package and learn what to do:
`browseVignettes("DEGreport")`
Here is the last devel [vignette](https://bioconductor.org/packages/devel/bioc/vignettes/DEGreport/inst/doc/DEGreport.pdf).
[Bioconductor]: https://bioconductor.org
[bcbio-nextgen]: https://github.com/chapmanb/bcbio-nextgen
[devtools]: https://cran.r-project.org/package=devtools
[R]: https://www.r-project.org
