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.Rbuildignore 100644 0 kb
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DESCRIPTION 100644 2 kb
LICENSE 100644 1 kb
NAMESPACE 100644 4 kb
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README.md 100644 2 kb
_pkgdown.yml 100644 1 kb
README.md
# DEGreport <img src="https://raw.githubusercontent.com/lpantano/DEGreport/main/inst/sticker/degreport.png" width="150" height="150" align="right"/> [![Build status](https://secure.travis-ci.org/lpantano/DEGreport.png)](https://travis-ci.org/lpantano/DEGreport) [![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active) [![BioC Downloads](http://bioconductor.org//shields/downloads/DEGreport.svg)](http://bioconductor.org/packages/3.6/bioc/html/DEGreport.html) [![coverage](https://img.shields.io/codecov/c/github/lpantano/DEGreport/master.svg)](https://codecov.io/github/lpantano/DEGreport?branch=master) [![Support this project by running your production jobs at BatchX](https://images.batchx.io/gh-badge-logo.svg)](https://platform.batchx.io/lpantano-team/tools/degreport%2Fdeg-patterns "Support this project by running your production jobs at BatchX") QCs, figures and analyses after differential expression with DESeq2 or other similar tool. Pantano L (2017). DEGreport: Report of DEG analysis. R package version 1.13.8. DOI: [10.18129/B9.bioc.DEGreport](https://doi.org/doi:10.18129/B9.bioc.DEGreport) ## Installation This is an [R][] package. ### [Bioconductor][] stable version ```r if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("DEGreport") ``` ### [Bioconductor][] latest version ```r devtools::install_git("https://git@git.bioconductor.org/packages/DEGreport") ``` ### [devtools][] unstable version ```r install.packages("devtools") devtools::install_github("lpantano/DEGreport") ``` Load the package and learn what to do: `browseVignettes("DEGreport")` Here is the last devel [vignette](https://bioconductor.org/packages/devel/bioc/vignettes/DEGreport/inst/doc/DEGreport.pdf). [Bioconductor]: https://bioconductor.org [bcbio-nextgen]: https://github.com/chapmanb/bcbio-nextgen [devtools]: https://cran.r-project.org/package=devtools [R]: https://www.r-project.org