1. ChIPexoQual
  2. Graph
Graph of ChIPexoQual
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  • 7b88583 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:16:43 -0400;
  • 45b83a8 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:16:43 -0400;
  • 22bd18a bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:55:58 -0400;
  • bd77a4d (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:55:58 -0400;
  • a0dc514 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:55:06 -0400;
  • fb1b084 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:55:06 -0400;
  • 6650ce3 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:52:01 -0400;
  • a96537e (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:52:01 -0400;
  • 6775da3 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:15:05 -0400;
  • 60f340b (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:15:05 -0400;
  • 7d1dfa0 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:38:35 +0000;
  • d4cc573 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:38:35 +0000;
  • f1c48ae Pass serialized SingleCellExperiment instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-18 13:48:13 -0800;
  • 4d0c73d bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:32:36 +0000;
  • 3746d89 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:32:36 +0000;
  • 00a590f bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:25:27 +0000;
  • ed02199 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:25:27 +0000;
  • 8f2079c bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:20:57 -0400;
  • c593ac2 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:20:56 -0400;
  • ed85e18 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:04:47 +0000;
  • d6ceb7f (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:04:47 +0000;
  • 3e5c8cd bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:42:13 -0400;
  • 74a2848 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:10:16 -0400;
  • ce23440 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:14:09 -0400;
  • 090f305 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:05 -0400;
  • 817ab92 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:37 -0400;
  • 74ec35d (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:03 -0400;
  • 4af6307 remove unnecessary reference to BiocInstaller by Martin Morgan <martin.morgan@roswellpark.org> 2018-09-06 15:48:08 -0400;
  • 97b9747 replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-29 15:34:20 -0400;
  • 89c07e6 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:42 -0400;
  • c4ec44a (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:44 -0400;
  • 4ef87b2 (origin/RELEASE_3_6, RELEASE_3_6) added documentation for calculateSummary function by welch6 <welch16@gmail.com> 2018-02-28 21:43:49 -0600;
  • 088837a Merged sub-sampling and blacklist modules. by welch6 <welch16@gmail.com> 2018-02-28 20:32:03 -0600;
  • 2e7fd0b fixed conflict by welch6 <welch16@gmail.com> 2018-02-28 19:20:09 -0600;
  • b459a06 filled NEWS file with the difference between this and master branch. Increased version and fixed vignette issue by welch6 <welch16@gmail.com> 2018-01-24 17:44:49 -0600;
  • 18e15cd fixed conflicts in version change by welch6 <welch16@gmail.com> 2018-01-24 16:31:54 -0600;
  • d9cbd92 fixed issue with BiocStyle:html_document deprecated function by welch6 <welch16@gmail.com> 2018-01-24 16:28:44 -0600;
  • 0887c10 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:30 -0400;
  • 721cddd bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:41:24 -0400;
  • 279fcfc bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • a9e59c5 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 7c28125 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 0972fd9 Processed vignettes (PDF or HTML) don't belong to the package source tree and are actually harmful. by Herve Pages <hpages@fhcrc.org> 2017-04-17 19:10:50 +0000;
  • 33e9a95 Re-generated the vignette by Rene Welch <welch16@gmail.com> 2017-04-10 13:16:38 -0500;
  • 7847a96 added new modules to devel version, and updated the R install instruction by Rene Welch <welch16@gmail.com> 2017-04-10 06:17:49 -0500;
  • e4dcd17 updated version by Rene Welch <welch16@gmail.com> 2017-04-09 18:02:29 -0500;
  • cd81709 Added ExoDataBlacklist module to the package. by Rene Welch <welch16@gmail.com> 2017-04-09 18:02:14 -0500;
  • df27ee7 Included a collection of available blacklists in the package by Rene Welch <welch16@gmail.com> 2017-04-09 18:01:54 -0500;
  • ccd7711 Added formatRegions method for re-usability by Rene Welch <welch16@gmail.com> 2017-04-09 18:01:20 -0500;
  • b48fe94 Regenerated documentation with roxygen's new version. by Rene Welch <welch16@gmail.com> 2017-04-09 18:00:37 -0500;
  • e576054 Adding mimager, funtooNorm, DMRScan, ChIPexoQual by Martin Morgan <mtmorgan@fhcrc.org> 2017-01-05 23:10:15 +0000;
  • 287adea fixed points suggested by goodpractice package. by welch16 <welch16@gmail.com> 2017-01-03 16:17:01 -0600;
  • 53eda0a updated README.md by welch16 <welch16@gmail.com> 2016-12-28 16:07:07 -0600;
  • 4b7954c added parameters to keep numeric order in paramDistBoxplot and increased version by welch16 <welch16@gmail.com> 2016-12-07 18:11:15 -0600;
  • 3d6d12e removed repeated line by welch16 <welch16@gmail.com> 2016-11-30 21:46:52 -0600;
  • 4abae12 added comments to vignette about how to interpret results obtained from ExoDataSubsampling by welch16 <welch16@gmail.com> 2016-11-30 21:42:48 -0600;
  • 4578136 Adapted regionCompplot to recover plots similar to the ones in the manuscript as the recent updates to ggplot2 changed the output of this plot. by welch16 <welch16@gmail.com> 2016-11-30 16:00:27 -0600;
  • ec963e9 changed bibliography format. by welch16 <welch16@gmail.com> 2016-11-30 15:19:15 -0600;
  • 6fe80e9 Created an accompanying website for the pipeline by using pkgdown. by welch16 <welch16@gmail.com> 2016-11-30 14:59:40 -0600;
  • 22f22fa Merge branch 'master' of github.com:Welch16/ChIPexoQual by welch16 <welch@stat.wisc.edu> 2016-11-28 16:49:34 -0600;
  • 182175b updated version by welch16 <welch@stat.wisc.edu> 2016-11-28 16:46:09 -0600;
  • ab878ff changed DESCRIPTION file to run with older versions of S4Vectors by welch16 <welch@stat.wisc.edu> 2016-11-28 16:46:09 -0600;
  • f7905b3 Converted the intermediate step functions that generated DataFrames for the visualizations into internal functions by welch16 <welch16@gmail.com> 2016-11-15 12:50:20 -0600;
  • 627f993 Added BugReports and removed Date fields by welch16 <welch16@gmail.com> 2016-11-15 12:49:36 -0600;
  • 18af7e0 Changed assignment operator '=' for '<-'. Also now it imports functions instead of all the package. by welch16 <welch16@gmail.com> 2016-11-14 12:08:15 -0600;
  • 23d1903 increased version by welch16 <welch16@gmail.com> 2016-10-31 13:11:55 -0500;
  • e8898f9 changed R version to adapt to bioconductor's release by welch16 <welch16@gmail.com> 2016-10-26 19:18:19 -0500;
  • 0a81dcb added test to check if there is an error when 'sample.depth' is not numeric by welch16 <welch16@gmail.com> 2016-10-26 14:19:27 -0500;
  • d0c1cae Added the ExoDataSubsampling function that returns a list of ExoData objects where the jth element is the result of ExoData when using sampling.depth[j] reads and applying the pipeline. by welch16 <welch16@gmail.com> 2016-10-26 14:16:39 -0500;
  • 805cb92 - Changed name of functions to camelCase. by welch16 <welch16@gmail.com> 2016-10-14 15:51:52 -0500;
  • 41352f5 Added @return field to the exoExample documentation. by welch16 <welch16@gmail.com> 2016-10-07 20:07:58 -0500;
  • b01572c changed expect_identical to expect_equal to correct failed tests in mac and windows by welch16 <welch16@gmail.com> 2016-10-07 18:43:14 -0500;
  • 5386d09 Changed uses of mcmapply and mclapply for their corresponding versions from BiocParallel. Added condition to check if the code is run from Windows machine to use snow parameters instead of regular parameters by welch16 <welch16@gmail.com> 2016-10-07 13:51:40 -0500;
  • 981e95f Changed exampleExoData with the 3 replicates for exoExample with only the third one to reduce package size and fixed tests and examples accordingly by welch16 <welch16@gmail.com> 2016-09-21 19:00:18 -0500;
  • 0a9f827 added an example, with dontrun instead of fake one by welch16 <welch16@gmail.com> 2016-09-21 18:58:31 -0500;
  • c7fac6a corrected ChIPexoQualExample version to agree with bioc by welch16 <welch16@gmail.com> 2016-08-31 14:22:51 -0500;
  • 4d1d9f7 Merge branch 'master' of github.com:welch16/ChIPexoQual by welch16 <welch16@gmail.com> 2016-08-29 11:44:33 -0500;
  • 881a8e8 triggering another build by welch16 <welch16@gmail.com> 2016-08-29 11:42:42 -0500;
  • 641f311 triggering another build by welch16 <welch16@gmail.com> 2016-08-29 11:42:42 -0500;
  • 1786985 changed data.table version in DESCRIPTION by welch16 <welch16@gmail.com> 2016-08-10 13:13:42 -0500;
  • 418dbe2 moved the exampleExoData file from ChIPexoQualExample to ChIPexoQual to avoid circular references by welch16 <welch16@gmail.com> 2016-08-08 16:09:47 -0500;
  • 9fee966 Merge branch 'master' into aux. In the aux branch we have the edits to the vignette by welch16 <welch16@gmail.com> 2016-08-05 17:37:44 -0500;
  • 8c4b730 Revert "updated vignette with Sunduz comments" by welch16 <welch16@gmail.com> 2016-08-05 17:27:49 -0500;
  • d0e5a27 Merge pull request <a href="#2">#2</a> from keleslab/master by Rene <welch@stat.wisc.edu> 2016-08-05 17:10:22 -0500;
  • 360a960 Merge pull request <a href="#2">#2</a> from welch16/master by Rene <welch@stat.wisc.edu> 2016-08-05 17:09:34 -0500;
  • d578e41 Merge pull request <a href="#1">#1</a> from keleslab/master by Rene <welch@stat.wisc.edu> 2016-08-05 17:02:41 -0500;
  • f64c9b6 updated vignette with Sunduz comments by welch16 <welch16@gmail.com> 2016-08-05 16:00:49 -0500;
  • ae5db7e Merge pull request <a href="#1">#1</a> from welch16/master by Rene <welch@stat.wisc.edu> 2016-07-27 14:44:52 -0500;
  • 09288a0 updated vignette by welch16 <welch16@gmail.com> 2016-07-27 14:19:48 -0500;
  • 9c736fe added tests of summary_plots functions, must return error when the length of the names is different than the amount of ExoData objects by welch16 <welch16@gmail.com> 2016-07-27 13:02:11 -0500;
  • 43a49ea added tests for the functions that generate the DataFrame's for analysis by welch16 <welch16@gmail.com> 2016-07-27 13:01:31 -0500;
  • aa942a4 changed the call to viridis::viridis as the package is already imported by welch16 <welch16@gmail.com> 2016-07-27 13:00:55 -0500;
  • b62e084 finished the vignette by welch16 <welch16@gmail.com> 2016-07-26 19:17:16 -0500;
  • 8aa7bde added methods to make boxplots of the estimated parameter distributions by welch16 <welch16@gmail.com> 2016-07-26 19:16:57 -0500;
  • f9eb136 fixed issue to make possible to run ExoData with GRanges object too by welch16 <welch16@gmail.com> 2016-07-26 15:48:55 -0500;
  • e6e6394 more gridExtra to Suggest instead of Depends by welch16 <welch16@gmail.com> 2016-07-26 15:48:30 -0500;
  • 3d8daaf added ExoData right construction tests by welch16 <welch16@gmail.com> 2016-07-26 12:45:20 -0500;
  • ddfe8c7 added grid.arrange from gridExtra in vignette to make it cleaner by welch16 <welch16@gmail.com> 2016-07-26 12:44:48 -0500;
  • fe182ba wrote first half of the vignette by welch16 <welch16@gmail.com> 2016-07-25 20:46:52 -0500;
  • bc5d1db fixed warnings and notes from R CMD check by welch16 <welch16@gmail.com> 2016-07-22 20:13:03 -0500;