1. CNVRanger
  2. Graph
Graph of CNVRanger
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  • 7cbb1a6 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:34:36 -0400;
  • 08cfb9e (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:34:36 -0400;
  • aa23032 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:12:23 -0400;
  • dca5773 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:12:23 -0400;
  • bccc306 (origin/RELEASE_3_18, RELEASE_3_18) fix cnvEQTL nr.states error by lgeistlinger <ludwig.geistlinger@gmail.com> 2024-02-24 16:54:29 -0500;
  • 43040b1 fix cnvEQTL nr.states error by lgeistlinger <ludwig.geistlinger@gmail.com> 2024-01-19 20:16:38 -0500;
  • eb5415a bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:10:50 -0400;
  • e3c934c bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:10:50 -0400;
  • ce5322e bump version by lgeistlinger <ludwig.geistlinger@gmail.com> 2023-08-07 10:53:59 -0400;
  • c50dcd8 Avoid CNV segs with no variation by Vinicius Henrique da Silva <vinicius.silva@stgen.com> 2023-08-07 14:27:59 +0000;
  • ed4f683 (origin/RELEASE_3_17, RELEASE_3_17) update email by lgeistlinger <ludwig.geistlinger@gmail.com> 2023-07-29 23:47:52 -0400;
  • 89e9e42 remove email from man pages by lgeistlinger <ludwig.geistlinger@gmail.com> 2023-07-29 23:45:02 -0400;
  • ccde48f cnvGWAS: use nominal p-values for qqplot by lgeistlinger <ludwig.geistlinger@gmail.com> 2023-06-17 15:52:00 -0400;
  • fcd6d3f cnvGWAS: use nominal p-values for qqplot by lgeistlinger <ludwig.geistlinger@gmail.com> 2023-06-17 15:18:54 -0400;
  • f85d494 add org.Hs.eg.db to Suggests by lgeistlinger <ludwig.geistlinger@gmail.com> 2023-05-22 14:20:17 -0400;
  • 17d0070 add org.Hs.eg.db to Suggests by lgeistlinger <ludwig.geistlinger@gmail.com> 2023-05-22 14:19:04 -0400;
  • f1d7f44 add TxDb to Suggests by lgeistlinger <ludwig.geistlinger@gmail.com> 2023-05-20 12:58:10 -0400;
  • e19cecd add TxDb to Suggests by lgeistlinger <ludwig.geistlinger@gmail.com> 2023-05-20 12:57:03 -0400;
  • 3ce891a add statmod to Suggests by lgeistlinger <ludwig.geistlinger@gmail.com> 2023-05-13 14:37:44 -0400;
  • 97d33ff add statmod to Suggests by lgeistlinger <ludwig.geistlinger@gmail.com> 2023-05-13 14:36:28 -0400;
  • ebc4fa3 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:07:48 -0400;
  • f67f784 bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:07:48 -0400;
  • 0308892 fix deprecation from TCGAutils by lgeistlinger <ludwig.geistlinger@gmail.com> 2023-02-25 14:33:56 -0500;
  • 4b9a183 Merge remote-tracking branch 'upstream/master' pull upstream changes by lgeistlinger <ludwig.geistlinger@gmail.com> 2022-11-08 14:18:46 -0500;
  • 79c68ed bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:19:14 -0400;
  • 59487b4 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:19:14 -0400;
  • ebc246f bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:53:07 +0000;
  • 2823099 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:53:07 +0000;
  • 004d62c update README by lgeistlinger <ludwig.geistlinger@gmail.com> 2022-02-17 19:36:06 -0500;
  • 36b5477 (origin/RELEASE_3_14, RELEASE_3_14) cnvOncoPrint: robustify state labels by lgeistlinger <ludwig.geistlinger@gmail.com> 2022-02-17 19:21:40 -0500;
  • 09967b3 cnvOncoPrint: robustify state labels by lgeistlinger <ludwig.geistlinger@gmail.com> 2022-02-17 19:18:44 -0500;
  • 59aac61 cnvOncoPrint: robustify state labels by lgeistlinger <ludwig.geistlinger@gmail.com> 2022-02-17 19:18:26 -0500;
  • 5a6a811 plotEQTL: add cex argument by lgeistlinger <ludwig.geistlinger@gmail.com> 2022-02-17 18:03:15 -0500;
  • a079260 plotEQTL: fix CN argument by lgeistlinger <ludwig.geistlinger@gmail.com> 2022-02-15 19:36:11 -0500;
  • d45b936 plotEQTL: fix CN argument by lgeistlinger <ludwig.geistlinger@gmail.com> 2022-02-15 19:24:04 -0500;
  • 5ca6a1e bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:49:21 +0000;
  • 0432434 bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:49:21 +0000;
  • ef39e51 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:40:54 +0000;
  • dfb9864 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:40:54 +0000;
  • 370085a fix cTD version by lgeistlinger <ludwig.geistlinger@gmail.com> 2021-05-09 18:03:15 -0400;
  • bdb89b9 fix cTD version by lgeistlinger <ludwig.geistlinger@gmail.com> 2021-05-09 18:03:02 -0400;
  • 7badab5 fix ExperimentHub version by lgeistlinger <ludwig.geistlinger@gmail.com> 2021-05-02 21:09:09 -0400;
  • cae73e1 Correction - package version by Vinicius Henrique da Silva <vhsilva@biotec01.esalq.usp.br> 2021-05-02 18:58:34 -0300;
  • db5695d cnvGWAS() linear regression based on PLINK 1.07 was deprecated. Updated cnvGWAS() uses lm(). by Vinicius Henrique da Silva <vhsilva@biotec01.esalq.usp.br> 2021-05-02 18:51:11 -0300;
  • 9448d01 add line break by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-12-16 18:23:52 -0500;
  • 64af82d add sticker by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-12-16 18:18:20 -0500;
  • 01e07da add sticker by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-12-16 18:16:47 -0500;
  • ca2c89f version bump by LiNk-NY <mramos09@gmail.com> 2020-12-13 11:55:51 -0500;
  • 32327ff add version tag by LiNk-NY <mramos09@gmail.com> 2020-12-13 11:54:03 -0500;
  • 15c7d5d update email by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-12-09 16:52:59 -0500;
  • a995fa8 (origin/RELEASE_3_12, RELEASE_3_12) change email by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-12-09 15:36:10 -0500;
  • f7233a4 change email by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-12-09 15:34:12 -0500;
  • c519309 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:42:23 -0400;
  • 6eca51f bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:42:23 -0400;
  • 5791973 vignette: incorporate seqlevelsStyle update by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-07-10 13:13:19 -0400;
  • 49d33f5 small fixes to cnvEQTL and cnvGWAS by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-06-12 19:02:22 -0400;
  • 1db2a05 small fixes to cnvEQTL and cnvGWAS by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-06-12 19:01:55 -0400;
  • 6b8381b Avoid 0 p-values by Vinicius Henrique da Silva <vhsilva@biotec01.esalq.usp.br> 2020-06-05 15:19:56 -0300;
  • 2b6d559 (origin/RELEASE_3_11, RELEASE_3_11) update affiliation vinicius by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-06-05 12:12:56 -0400;
  • 674fd3d update affiliation vinicius by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-06-05 12:12:03 -0400;
  • 848b2df vignette: update affiliation + email vinicius by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-06-04 22:26:56 -0400;
  • 14d5453 vignette: update affiliation + email vinicius by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-06-04 22:23:49 -0400;
  • f62fc31 cnvEQTL: support window=NULL for genome-wide testing by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-06-04 16:31:23 -0400;
  • 0a9e4e5 cnvEQTL: support window=NULL for genome-wide testing by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-06-04 15:39:44 -0400;
  • debdcf2 cnvEQTL: support window=NULL for genome-wide testing by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-06-04 15:39:34 -0400;
  • a5ae12a bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:23:12 +0000;
  • 3cc7b83 bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:23:11 +0000;
  • ae87279 update CITATION by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-04-11 12:15:50 -0400;
  • 634dda7 update CITATION by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-04-11 12:15:08 -0400;
  • efa2676 populationRanges: fix stacking by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-01-23 21:46:55 -0500;
  • b21b044 populationRanges: filter CN neutral calls by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2020-01-20 19:01:55 -0500;
  • 93b1be4 add functionality for simple overlap analysis by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-12-03 13:55:05 -0500;
  • 556ffbf (origin/RELEASE_3_10, RELEASE_3_10) add CITATION by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-11-13 18:37:25 -0500;
  • 7b434c9 add CITATION by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-11-13 18:35:39 -0500;
  • c9c38ee plotRecurrentRegions: fix empty tracks by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-11-07 15:59:02 -0500;
  • 2d4226f plotRecurrentRegions: fix empty tracks by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-11-07 15:53:10 -0500;
  • 13c696c bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:43:29 -0400;
  • 55e57a6 bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:11:29 -0400;
  • 63b4db9 moving Gviz to Suggests by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-10-21 12:54:34 -0400;
  • 29972ee add NEWS for upcoming Bioc release by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-10-16 13:27:01 -0400;
  • ef38e11 (origin/RELEASE_3_9, RELEASE_3_9) extend input format description for cnvGWAS by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-07-16 17:50:24 -0400;
  • 8e8e0a8 extend input format description for cnvGWAS by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-07-16 17:46:21 -0400;
  • 0d9af09 Update CNVRanger.Rmd by viniciushdasilva <31412322+viniciushdasilva@users.noreply.github.com> 2019-07-16 12:57:04 +0200;
  • 4f3d440 Update CNVsegments.png by viniciushdasilva <31412322+viniciushdasilva@users.noreply.github.com> 2019-07-16 07:47:24 +0200;
  • 6da8ab1 fix S4Vectors::splitAsList by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-07-15 15:30:56 -0400;
  • 6b4e934 vignette_improvement by viniciushdasilva <31412322+viniciushdasilva@users.noreply.github.com> 2019-07-15 17:01:02 +0200;
  • 0798f6f Setup GWAS vignette by viniciushdasilva <31412322+viniciushdasilva@users.noreply.github.com> 2019-07-15 16:06:25 +0200;
  • ae2f926 extensive documentation enhancements by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-07-14 08:28:03 -0400;
  • 7f689d6 vignette: extend input format description by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-07-14 08:12:34 -0400;
  • 2b32e0e visualization for populationRanges and cnvEQTL by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-07-13 07:37:59 -0400;
  • 633e846 vignette: key functions overview by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-07-09 06:02:23 -0400;
  • 44daaf4 add :: notation to vignette by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-07-07 15:31:40 -0400;
  • f3eed2d add :: notation to vignette by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-07-07 15:16:23 -0400;
  • 63ff4e5 Improvements vignette by viniciushdasilva <31412322+viniciushdasilva@users.noreply.github.com> 2019-06-20 11:07:19 +0200;
  • 23a49d0 Update CNVRanger.Rmd by viniciushdasilva <31412322+viniciushdasilva@users.noreply.github.com> 2019-06-19 18:06:10 +0200;
  • 8dfb677 Import selectively from IRanges instead of importing the full namespace by Hervé Pagès <hpages@fredhutch.org> 2019-06-08 16:31:39 -0700;
  • 2c2eaa6 splitAsList() has moved from IRanges to S4Vectors by Hervé Pagès <hpages@fredhutch.org> 2019-06-08 13:58:30 -0700;
  • d7a1146 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:16:24 -0400;
  • 08c9a64 bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:14 -0400;
  • 2466112 cnvEQTL: adjusting across cnv regions by lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de> 2019-04-06 18:33:07 -0400;