1. CNVPanelizer
  2. Graph
Graph of CNVPanelizer
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  • 4aac16f (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:02:11 -0400;
  • bff6031 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:02:11 -0400;
  • d027772 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:44:28 -0400;
  • 9cd2650 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:44:28 -0400;
  • d9575dc Undeprecate by lshep <lori.shepherd@roswellpark.org> 2024-04-02 11:51:12 -0400;
  • 6156de4 fix for deprecated package (exomeCopy) by Cristiano <tanovsky@gmail.com> 2024-03-28 14:20:33 +0000;
  • ef23cc6 Deprecate by lshep <lori.shepherd@roswellpark.org> 2024-02-29 12:09:38 -0500;
  • e659edd bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:44:06 -0400;
  • ca119f6 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:44:06 -0400;
  • 5d21b78 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:40:16 -0400;
  • 86ffb06 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:40:16 -0400;
  • 8ebbaac bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:11:51 -0400;
  • e0047ba (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:11:51 -0400;
  • 44c9300 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:26:01 +0000;
  • f12c17c (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:26:01 +0000;
  • 6a20a6b bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:21:16 +0000;
  • 29442f8 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:21:16 +0000;
  • 301209c bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:14:20 +0000;
  • b0dc959 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:14:20 +0000;
  • 4f3a6f2 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:06:10 -0400;
  • e43f2fb (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:06:10 -0400;
  • 66ec7f2 Moving BiocGenerics at DESCRIPTION from Suggests to Imports by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2020-10-18 01:28:10 +0100;
  • 671e5e7 Import NROW() generic from BiocGenerics rather than S4Vectors by Hervé Pagès <hpages@fredhutch.org> 2020-08-31 18:26:46 -0700;
  • e0660c6 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:49:47 +0000;
  • 870407f (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:49:47 +0000;
  • 5fc5e09 Add fix due to change of Matrix class type in R version 4 by Cristiano Oliveira <tanovsky@gmail.com> 2020-04-25 23:53:00 +0200;
  • 75c8f1a bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:39:34 -0400;
  • c34b82b (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:09:21 -0400;
  • 2108b77 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:12:44 -0400;
  • 16d1b40 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:55 -0400;
  • 1f4f5b5 update NEWS with latest bug fix by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2019-04-22 21:37:17 +0200;
  • 8cfe66d bug fix: Fix test with the expected results after change in sample function by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2019-04-22 21:33:01 +0200;
  • 0a74020 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:34 -0400;
  • 8779375 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:58 -0400;
  • d7e8937 additional updates from BiocInstaller to BiocManager by LiNk-NY <marcel.ramosperez@roswellpark.org> 2018-09-06 15:50:45 +0000;
  • 255b018 replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:46:30 -0400;
  • 8ff4302 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:41 -0400;
  • e941efc (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:37 -0400;
  • 670bc17 add shiny method to docs by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2018-04-24 14:39:22 +0200;
  • 56e71d4 update NEWS file by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2018-04-24 11:08:24 +0200;
  • bbc767e add temporary parallel function by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2018-04-24 11:04:38 +0200;
  • f83c23f fix warning msgs by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2018-04-23 11:08:56 +0200;
  • fc0c8bb fix typo by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2018-04-20 14:58:17 +0200;
  • c183d07 fix export of required methods by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2018-04-20 12:17:12 +0200;
  • 7cf97e7 add missing import by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2018-04-17 18:43:42 +0200;
  • d6f874a solve loading warning messages by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2018-04-17 18:23:36 +0200;
  • 486e8f1 remove setClass causing issues by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2018-04-13 12:05:17 +0200;
  • 0f93285 solve shiny run method issue by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2018-04-12 18:25:33 +0200;
  • 2ad4758 add changes to code and documentation by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2018-04-12 11:11:30 +0200;
  • 79cbd8f synchronize with github by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2018-04-11 15:33:01 +0200;
  • aed3a8c add library import to run tests by tanovsky <cristiano.oliveira@med.uni-heidelberg.de> 2018-04-10 10:35:42 +0200;
  • 4fd9c12 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:10 -0400;
  • 850c8dc (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:40:52 -0400;
  • a382a77 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • f2aa160 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 1f19147 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 2c6cb6a bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 6bf3739 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • d7381ef bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • af5d493 (origin/RELEASE_3_3, RELEASE_3_3) Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:18:19 +0000;
  • fcc8c9d Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:14:22 +0000;
  • 11e922d Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:15:25 +0000;
  • 15977da Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:05:31 +0000;
  • fd0b63e bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 1933a0b Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 2f41dd6 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 3f92471 Fix Bioconductor warnings and update maintainer by Cristiano Oliveira <cristiano.oliveira@med.uni-heidelberg.de> 2016-03-18 13:40:50 +0000;
  • 315aa4f Update version number by Cristiano Oliveira <cristiano.oliveira@med.uni-heidelberg.de> 2016-03-16 17:19:12 +0000;
  • 035d5f1 Solve Bioconductor complain about 'elementLengths' by Cristiano Oliveira <cristiano.oliveira@med.uni-heidelberg.de> 2016-03-16 17:09:03 +0000;
  • 90318fb Update development version for bioconductor submission by Cristiano Oliveira <cristiano.oliveira@med.uni-heidelberg.de> 2016-03-14 13:53:29 +0000;
  • 87c0a9a amend: Add thesis supervisor by Cristiano Oliveira <cristiano.oliveira@med.uni-heidelberg.de> 2016-03-14 13:17:09 +0000;
  • 72438d0 Add thesis supervisor by Cristiano Oliveira <cristiano.oliveira@med.uni-heidelberg.de> 2016-03-14 13:04:27 +0000;
  • 1d55b48 correct case by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-01-30 02:10:52 +0000;
  • aaf7a2e elementLengths was renamed -> elementNROWS in S4Vectors (new name reflects TRUE semantic, old name will be deprecated soon) by Herve Pages <hpages@fhcrc.org> 2016-01-29 01:22:03 +0000;
  • 2a28aa0 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • a90ddb7 (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 4d88ef8 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 30d2491 Add robust as option to calculate Background calculation by Cristiano Oliveira <cristiano.oliveira@med.uni-heidelberg.de> 2015-10-04 22:48:49 +0000;
  • 1aec561 Fix version number by Cristiano Oliveira <cristiano.oliveira@med.uni-heidelberg.de> 2015-10-03 19:49:45 +0000;
  • 625d0c1 Change statistics to log ratio by Cristiano Oliveira <cristiano.oliveira@med.uni-heidelberg.de> 2015-10-02 23:37:34 +0000;
  • f7ef44c Add fix for inconsistencies by Cristiano Oliveira <cristiano.oliveira@med.uni-heidelberg.de> 2015-09-21 10:37:12 +0000;
  • 3ae39b9 Add small changes for bioconductor submission by Cristiano Oliveira <cristiano.oliveira@med.uni-heidelberg.de> 2015-09-17 21:35:55 +0000;
  • 47caca1 Merge changes for bioconductor release by Cristiano Oliveira <cristiano.oliveira@med.uni-heidelberg.de> 2015-09-16 13:27:22 +0000;
  • e34e4a7 Adds CNVPanelizer, XBSeq, Prize to the repos. by Marc Carlson <mcarlson@fhcrc.org> 2015-06-25 21:35:13 +0000;