# CAGEfightR CAGEfightR is an R-package for analyzing Cap Analysis of Gene Expression (CAGE) data in Bioconductor. ## Installation Install the most recent stable version from Bioconductor: ```{r bioconductor, eval=FALSE} if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("CAGEfightR") ``` Or install the development version directly from GitHub using `devtools`: ``` r # Install CRAN packages and CAGEfightR devtools::install_github("MalteThodberg/CAGEfightR", build_vignettes = TRUE) ``` When using `devtools` you might need to manually install dependencies from Bioconductor (See `DESRIPTION` for a list of these). ## Examples See the vignette for an in-depth guide to using `CAGEfightR`!