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[![BioC Release Build Status](]( - Bioconductor Release Build [![BioC Dev Build Status](]( - Bioconductor Dev Build # BridgeDbR package R package for BridgeDb, a tool for identifier mapping. Learn about BridgeDb at and read about it in this paper: Van Iersel, M.; Pico, A.; Kelder, T.; Gao, J.; Ho, I.; Hanspers, K.; Conklin, B.; Evelo, C. BMC Bioinformatics 2010, 11, 5, The DOI of this package is The source code of this package is available from License: AGPL-3 Available from Bioconductor =========================== To install this package, start R and enter: ``` install.packages("BiocManager") BiocManager::install("BridgeDbR") ``` To view documentation for the version of this package installed in your system, start R and enter: ``` browseVignettes("BridgeDbR") ``` Compiling and Installing ======================== To compile and install the lastest version from GitHub, or to test your patches, use the following commands: R CMD build BridgeDbR R CMD check BridgeDbR_x.y.z.tar.gz R CMD INSTALL BridgeDbR_x.y.z.tar.gz To create the vignette: rm -f BridgeDbR/inst/doc/tutorial.pdf; R CMD build BridgeDbR; tar xvf BridgeDbR_0.99.1.tar.gz BridgeDbR/inst/doc/tutorial.pdf To install the packages from within R with the devtools package: > install.packages("rJava") # if not present already > install.packages("curl") # if not present already > install.packages("devtools") # if not present already > library(devtools) > install_github("bridgedb/BridgeDbR") Dependencies ============ This package requires curl and RJava, which can be installed with: install.packages(pkgs=c("rJava", "curl"))