[](http://bioconductor.org/checkResults/release/bioc-LATEST/BridgeDbR/) - Bioconductor Release Build [](http://bioconductor.org/checkResults/devel/bioc-LATEST/BridgeDbR/) - Bioconductor Dev Build # BridgeDbR package R package for BridgeDb, a tool for identifier mapping. Learn about BridgeDb at http://www.bridgedb.org/ and read about it in this paper: Van Iersel, M.; Pico, A.; Kelder, T.; Gao, J.; Ho, I.; Hanspers, K.; Conklin, B.; Evelo, C. BMC Bioinformatics 2010, 11, 5, https://doi.org/10.1186/1471-2105-11-5 The DOI of this package is https://doi.org/10.18129/B9.bioc.BridgeDbR The source code of this package is available from https://github.com/bridgedb/BridgeDbR License: AGPL-3 Available from Bioconductor =========================== To install this package, start R and enter: ``` install.packages("BiocManager") BiocManager::install("BridgeDbR") ``` To view documentation for the version of this package installed in your system, start R and enter: ``` browseVignettes("BridgeDbR") ``` http://www.bioconductor.org/packages/release/bioc/html/BridgeDbR.html Compiling and Installing ======================== To compile and install the lastest version from GitHub, or to test your patches, use the following commands: R CMD build BridgeDbR R CMD check BridgeDbR_x.y.z.tar.gz R CMD INSTALL BridgeDbR_x.y.z.tar.gz To create the vignette: rm -f BridgeDbR/inst/doc/tutorial.pdf; R CMD build BridgeDbR; tar xvf BridgeDbR_0.99.1.tar.gz BridgeDbR/inst/doc/tutorial.pdf To install the packages from within R with the devtools package: > install.packages("rJava") # if not present already > install.packages("curl") # if not present already > install.packages("devtools") # if not present already > library(devtools) > install_github("bridgedb/BridgeDbR") Dependencies ============ This package requires curl and RJava, which can be installed with: install.packages(pkgs=c("rJava", "curl"))