1. BaalChIP
  2. Graph
Graph of BaalChIP
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  • 6f46c69 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:13:54 -0400;
  • d89a06f (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:13:54 -0400;
  • bac1109 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:53:36 -0400;
  • a8a0dc9 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:53:36 -0400;
  • 29cf4ff bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:52:41 -0400;
  • 7efb036 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:52:41 -0400;
  • 5708ab0 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:49:34 -0400;
  • 6129049 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:49:34 -0400;
  • 82bbb76 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:14:26 -0400;
  • d4145fe (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:14:26 -0400;
  • c249587 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:35:31 +0000;
  • 273bdf2 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:35:30 +0000;
  • c7fabe0 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:30:00 +0000;
  • cd0f8f3 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:30:00 +0000;
  • e4e07e7 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:22:59 +0000;
  • 49e2ae7 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:22:59 +0000;
  • 201938f changed version by ines de santiago <santia01@MacBook-Pro.local> 2021-03-02 17:34:30 +0000;
  • aa3b73f Delete BaalChIP.Rproj by Ines de Santiago <InesdeSantiago@users.noreply.github.com> 2021-03-01 19:18:17 +0000;
  • 1d3c1f7 Delete .Rbuildignore by Ines de Santiago <InesdeSantiago@users.noreply.github.com> 2021-03-01 19:18:07 +0000;
  • 712fdd0 Delete .Rproj.user directory by Ines de Santiago <InesdeSantiago@users.noreply.github.com> 2021-03-01 19:17:51 +0000;
  • 4425422 changed gitignore by ines de santiago <santia01@MacBook-Pro.local> 2021-03-01 19:17:34 +0000;
  • 02ec707 changed gitignore by ines de santiago <santia01@MacBook-Pro.local> 2021-03-01 19:16:41 +0000;
  • 176b3f4 deleted DS file by ines de santiago <santia01@MacBook-Pro.local> 2021-03-01 19:14:35 +0000;
  • cfab758 fix error stwd by ines de santiago <santia01@MacBook-Pro.local> 2021-03-01 19:13:34 +0000;
  • 664fe95 Merge branch 'RELEASE_3_12' by ines de santiago <santia01@MacBook-Pro.local> 2021-03-01 14:12:45 +0000;
  • a5ef128 (origin/RELEASE_3_12, RELEASE_3_12) deleted random files by ines de santiago <santia01@MacBook-Pro.local> 2021-03-01 14:11:25 +0000;
  • 64e2f5b fix report and new lines by ines de santiago <santia01@MacBook-Pro.local> 2021-03-01 14:05:33 +0000;
  • efdf479 solved conflicts by ines de santiago <santia01@MacBook-Pro.local> 2021-03-01 13:29:20 +0000;
  • 7e68ebc changes to stwd by ines de santiago <santia01@MacBook-Pro.local> 2021-03-01 12:57:55 +0000;
  • 5773ad3 removed setwd by ines de santiago <santia01@MacBook-Pro.local> 2021-03-01 11:27:21 +0000;
  • e913dd3 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:17:44 -0400;
  • c466b6c bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:17:44 -0400;
  • 53476ef bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:01:46 +0000;
  • 119ccb4 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:01:46 +0000;
  • 382eaf5 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:42:06 -0400;
  • cdb93e0 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:10:05 -0400;
  • f2d7085 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:13:53 -0400;
  • 8120f17 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:03 -0400;
  • ad3ee38 changed version by Ines de Santiago <inesdesantiago@gmail.com> 2019-03-21 11:18:15 +0000;
  • 7cebb7b fixed pileup function was updated and gives slightly different results that were maing uniTests fail by Ines de Santiago <inesdesantiago@gmail.com> 2019-03-20 14:54:49 +0000;
  • 3a65105 changes in readme by Ines de Santiago <inesdesantiago@gmail.com> 2019-03-20 14:50:36 +0000;
  • 3a2ec53 changes in readme by Ines de Santiago <inesdesantiago@gmail.com> 2019-03-20 14:49:50 +0000;
  • e9409ed Update test_get_allele_counts.R by Ines de Santiago <InesdeSantiago@users.noreply.github.com> 2019-03-20 01:14:59 +0000;
  • d62c7e6 Update DESCRIPTION by Ines de Santiago <InesdeSantiago@users.noreply.github.com> 2019-03-20 01:14:21 +0000;
  • d53e7ea Update README.md by Ines de Santiago <InesdeSantiago@users.noreply.github.com> 2019-03-14 16:31:59 +0000;
  • cff078c bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:36 -0400;
  • 291c42f (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:02 -0400;
  • e2134bd python code by Ines de Santiago <inesdesantiago@gmail.com> 2018-05-29 08:56:42 +0100;
  • 903c5df first commit by Ines de Santiago <inesdesantiago@gmail.com> 2018-05-29 08:56:08 +0100;
  • f6534c8 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:42 -0400;
  • fa69f3e (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:43 -0400;
  • 1a532a7 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:21 -0400;
  • dc97499 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:41:22 -0400;
  • a0b58c0 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 6a9c921 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 8f7d668 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 3ef8fc5 version 1.1.1. by Ines de Santiago <ines.desantiago@sbgdinc.com> 2017-04-05 18:21:32 +0100;
  • b091735 changes in the citation and a typo in the vignette. Changes to mantainer email by Ines de Santiago <ines.deSantiago@cruk.cam.ac.uk> 2017-04-05 17:02:38 +0000;
  • c375b9e version 0.99.6 by Ines de Santiago <ines.desantiago@sbgdinc.com> 2017-03-17 14:21:23 +0000;
  • 92cda72 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 443fe16 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 6a5e2dc bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • a5f6639 remove inappropriate hidden files by Martin Morgan <mtmorgan@fhcrc.org> 2016-09-24 16:56:28 +0000;
  • 1467a49 Adding readat, BaalChIP by Martin Morgan <mtmorgan@fhcrc.org> 2016-09-24 16:45:00 +0000;
  • c4fa0d9 unit tests by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-22 19:12:51 +0100;
  • 181fa37 testing formatR by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-21 20:52:34 +0100;
  • ecd9c82 minimized eval=FALSE, add alignmentSimulArgs by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-21 20:42:26 +0100;
  • 76c0a97 minimized eval=FALSE, add alignmentSimulArgs by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-21 20:41:11 +0100;
  • 536974d fix log_genotype_llh by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-21 19:20:41 +0100;
  • 0f3dc30 avoided for loops and paradigms by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-21 17:17:59 +0100;
  • 8ce179c use drop=FALSE when sub-setting data.frames by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-19 16:52:38 +0100;
  • 1e9328b Replaced 1:nrow(<>) by seq_len(nrow(<>)) everywhere by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-19 16:17:36 +0100;
  • 86f71f2 Used message() for progress updates - instead of cat by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-19 16:14:17 +0100;
  • d1da4be Included accessor function (BaalChIP.get) everywhere - instead of direct slot access like object@hets by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-19 15:41:49 +0100;
  • 07fc329 I created a contructor function BaalChIP rather than using new by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-13 15:26:43 +0100;
  • aeba6df vignette rmarkdown by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-02 15:37:35 +0100;
  • 3c6ffd6 added value field and changed R version by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-02 15:34:27 +0100;
  • 9f07739 updated vignette by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-02 15:19:00 +0100;
  • b110ad7 add VignetteBuilder by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-02 13:24:55 +0100;
  • 358e9c6 Update DESCRIPTION by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-02 13:07:45 +0100;
  • 093fd42 version by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-02 12:10:00 +0100;
  • af9583b Update DESCRIPTION by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-01 21:07:01 +0100;
  • a7ea2a5 version by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-01 11:50:34 +0100;
  • 5a0bb32 removed non ascii by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-01 11:49:41 +0100;
  • 2549bff Update DESCRIPTION by Ines de Santiago <inesdesantiago@gmail.com> 2016-09-01 09:15:54 +0100;
  • e19ac6d changed NEWS by Ines de Santiago <inesdesantiago@gmail.com> 2016-08-31 14:44:46 +0100;
  • 726e9e9 changed version by Ines de Santiago <inesdesantiago@gmail.com> 2016-08-31 14:39:39 +0100;
  • da099ac change in vignette by Ines de Santiago <inesdesantiago@gmail.com> 2016-08-31 14:33:12 +0100;
  • c8bbfd3 changes in vignette by Ines de Santiago <inesdesantiago@gmail.com> 2016-08-18 20:05:00 +0100;
  • 7864731 changed usage in plotQC function by Ines de Santiago <inesdesantiago@gmail.com> 2016-06-22 10:31:51 +0100;
  • 15ae578 fix several notes and warnings by Ines de Santiago <inesdesantiago@gmail.com> 2016-06-22 09:56:30 +0100;
  • b813443 readGappedAlignments() has been replaced with readGAlignments() by Ines de Santiago <inesdesantiago@gmail.com> 2016-06-21 12:55:14 +0100;
  • 1aa9514 add unit tests folder by Ines de Santiago <inesdesantiago@gmail.com> 2016-06-20 11:49:00 +0100;
  • d7eee75 add unit tests by Ines de Santiago <inesdesantiago@gmail.com> 2016-06-20 11:47:59 +0100;
  • ae937d4 add example.tsv by Ines de Santiago <inesdesantiago@gmail.com> 2016-06-20 11:15:16 +0100;
  • ff74470 changes in exampleChIP.tsv by Ines de Santiago <inesdesantiago@gmail.com> 2016-06-16 14:13:05 +0100;
  • 2f4a7d0 changes in Description file by Ines de Santiago <inesdesantiago@gmail.com> 2016-06-15 22:40:54 +0100;
  • 7950d9a changes in Description file by Ines de Santiago <inesdesantiago@gmail.com> 2016-06-15 22:39:46 +0100;
  • 0fed508 changes in Description file by Ines de Santiago <inesdesantiago@gmail.com> 2016-06-15 22:38:30 +0100;
  • 2f38a15 changed typo in DESCRIPTION file by Ines de Santiago <inesdesantiago@gmail.com> 2016-06-14 13:57:09 +0100;